miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26654 3' -50.2 NC_005808.1 + 26338 0.66 0.901029
Target:  5'- cGCGAUGCg---CGAG-CCgacCAGGCCg -3'
miRNA:   3'- -UGCUGCGauaaGUUCuGGac-GUUCGG- -5'
26654 3' -50.2 NC_005808.1 + 17541 0.66 0.901029
Target:  5'- uCGcCGCUGUUCGugcAGGCCcugGCGuggcaccuGGCCu -3'
miRNA:   3'- uGCuGCGAUAAGU---UCUGGa--CGU--------UCGG- -5'
26654 3' -50.2 NC_005808.1 + 27430 0.66 0.893613
Target:  5'- cCGAaugGCUGgaCGAGugCUGCGaggucGGCCc -3'
miRNA:   3'- uGCUg--CGAUaaGUUCugGACGU-----UCGG- -5'
26654 3' -50.2 NC_005808.1 + 24562 0.66 0.893613
Target:  5'- cGCGGCGaugg-CGAGGCCggccacgGuCGGGCCg -3'
miRNA:   3'- -UGCUGCgauaaGUUCUGGa------C-GUUCGG- -5'
26654 3' -50.2 NC_005808.1 + 2503 0.66 0.893613
Target:  5'- gUGGCGCcgaucUUCGAGgccgGCCUGCu-GCCg -3'
miRNA:   3'- uGCUGCGau---AAGUUC----UGGACGuuCGG- -5'
26654 3' -50.2 NC_005808.1 + 17688 0.66 0.893613
Target:  5'- cACGAUGCggcaaacaUCGAGGCCgGUAucgacaacgcgcAGCCg -3'
miRNA:   3'- -UGCUGCGaua-----AGUUCUGGaCGU------------UCGG- -5'
26654 3' -50.2 NC_005808.1 + 20693 0.66 0.893613
Target:  5'- aACGAgCGCaGgcCGAcaccGACCUGCGAcGCCg -3'
miRNA:   3'- -UGCU-GCGaUaaGUU----CUGGACGUU-CGG- -5'
26654 3' -50.2 NC_005808.1 + 31600 0.66 0.881128
Target:  5'- -aGGCGCUGUUuccacggcaacacagCGAGGCCcagcaGCAcGCCg -3'
miRNA:   3'- ugCUGCGAUAA---------------GUUCUGGa----CGUuCGG- -5'
26654 3' -50.2 NC_005808.1 + 33185 0.66 0.877891
Target:  5'- cACGGCGacAUUCAGGGCCUuggguucauggGCGaggauguaGGCCg -3'
miRNA:   3'- -UGCUGCgaUAAGUUCUGGA-----------CGU--------UCGG- -5'
26654 3' -50.2 NC_005808.1 + 6345 0.66 0.877891
Target:  5'- gGCGAC-CUGUUC--GGCCUGCccAGCg -3'
miRNA:   3'- -UGCUGcGAUAAGuuCUGGACGu-UCGg -5'
26654 3' -50.2 NC_005808.1 + 31264 0.66 0.877891
Target:  5'- gGCGACGUgaUAUUCGuuGACCccgacgugGCAgcgaAGCCu -3'
miRNA:   3'- -UGCUGCG--AUAAGUu-CUGGa-------CGU----UCGG- -5'
26654 3' -50.2 NC_005808.1 + 24812 0.66 0.869599
Target:  5'- cCGACaGCaugggUCGAGGCCgcGCAGGCg -3'
miRNA:   3'- uGCUG-CGaua--AGUUCUGGa-CGUUCGg -5'
26654 3' -50.2 NC_005808.1 + 30280 0.66 0.869599
Target:  5'- cGCGAguCGCcggaaaacgUCGGGuagcgccCCUGCGAGCCg -3'
miRNA:   3'- -UGCU--GCGaua------AGUUCu------GGACGUUCGG- -5'
26654 3' -50.2 NC_005808.1 + 2113 0.67 0.86103
Target:  5'- aAUGACGCUGcUUCAAuucauCgUGCAgcAGCCg -3'
miRNA:   3'- -UGCUGCGAU-AAGUUcu---GgACGU--UCGG- -5'
26654 3' -50.2 NC_005808.1 + 26386 0.67 0.86103
Target:  5'- cGCGguGCGCg--UCAAGACCgUGCcuGUCc -3'
miRNA:   3'- -UGC--UGCGauaAGUUCUGG-ACGuuCGG- -5'
26654 3' -50.2 NC_005808.1 + 24329 0.67 0.86103
Target:  5'- cCGGCGCcacgcUCAAGGug-GCAAGCCg -3'
miRNA:   3'- uGCUGCGaua--AGUUCUggaCGUUCGG- -5'
26654 3' -50.2 NC_005808.1 + 19315 0.67 0.86103
Target:  5'- uCGACGCcgagaaGUUCAuGGGCCUGac-GCCg -3'
miRNA:   3'- uGCUGCGa-----UAAGU-UCUGGACguuCGG- -5'
26654 3' -50.2 NC_005808.1 + 35470 0.67 0.851293
Target:  5'- gGCGACGCUGggcuugccaUCGgacugcgugaugaAGcCCUGCAacuucGGCCa -3'
miRNA:   3'- -UGCUGCGAUa--------AGU-------------UCuGGACGU-----UCGG- -5'
26654 3' -50.2 NC_005808.1 + 9706 0.67 0.843093
Target:  5'- cGCGugGCUGcUCAAcguguaccgcGACUUGaAGGCCc -3'
miRNA:   3'- -UGCugCGAUaAGUU----------CUGGACgUUCGG- -5'
26654 3' -50.2 NC_005808.1 + 2554 0.67 0.843093
Target:  5'- uCGGCGCUcgaAUUCaAAGACCgccuugUGCAGcacGCCu -3'
miRNA:   3'- uGCUGCGA---UAAG-UUCUGG------ACGUU---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.