miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26654 3' -50.2 NC_005808.1 + 6224 0.67 0.843093
Target:  5'- uGCGuuuUGCcuucggcCAGGGCCUGCAcGCCg -3'
miRNA:   3'- -UGCu--GCGauaa---GUUCUGGACGUuCGG- -5'
26654 3' -50.2 NC_005808.1 + 28873 0.67 0.833746
Target:  5'- gACGGCGCgcuggcugcUCAAGAUCggcaaccaggGCAAGCg -3'
miRNA:   3'- -UGCUGCGaua------AGUUCUGGa---------CGUUCGg -5'
26654 3' -50.2 NC_005808.1 + 21387 0.67 0.82416
Target:  5'- aAUGGCGCg---CuGGGCCUGCGcgAGCa -3'
miRNA:   3'- -UGCUGCGauaaGuUCUGGACGU--UCGg -5'
26654 3' -50.2 NC_005808.1 + 11273 0.67 0.82416
Target:  5'- uGCGGCGCUGggacgCucGGCCagGUAGGCg -3'
miRNA:   3'- -UGCUGCGAUaa---GuuCUGGa-CGUUCGg -5'
26654 3' -50.2 NC_005808.1 + 25323 0.68 0.814346
Target:  5'- cCGGCGCUcgUCGccgGGAUUgucCAGGCCg -3'
miRNA:   3'- uGCUGCGAuaAGU---UCUGGac-GUUCGG- -5'
26654 3' -50.2 NC_005808.1 + 20265 0.68 0.814346
Target:  5'- -gGGCGCUGc-CAAGACCgaggGCGacgacaaggcgaAGCCg -3'
miRNA:   3'- ugCUGCGAUaaGUUCUGGa---CGU------------UCGG- -5'
26654 3' -50.2 NC_005808.1 + 14214 0.68 0.804317
Target:  5'- aACG-CGCUGgaac-GGCCggaagGCAAGCCg -3'
miRNA:   3'- -UGCuGCGAUaaguuCUGGa----CGUUCGG- -5'
26654 3' -50.2 NC_005808.1 + 18251 0.68 0.803303
Target:  5'- -gGAUGCcggUCAcGACCUGCGccgagaacuugccGGCCg -3'
miRNA:   3'- ugCUGCGauaAGUuCUGGACGU-------------UCGG- -5'
26654 3' -50.2 NC_005808.1 + 35119 0.68 0.794086
Target:  5'- gGCGGCGUg---CucGAUCUGCGGcGCCa -3'
miRNA:   3'- -UGCUGCGauaaGuuCUGGACGUU-CGG- -5'
26654 3' -50.2 NC_005808.1 + 37586 0.68 0.773065
Target:  5'- cGCGGCGCUGaaagCGGacugcgccGACCUGCuguucGCCa -3'
miRNA:   3'- -UGCUGCGAUaa--GUU--------CUGGACGuu---CGG- -5'
26654 3' -50.2 NC_005808.1 + 15621 0.69 0.751388
Target:  5'- gACGGCGCcAUUgAccuGGACgUGgAGGCCg -3'
miRNA:   3'- -UGCUGCGaUAAgU---UCUGgACgUUCGG- -5'
26654 3' -50.2 NC_005808.1 + 32593 0.69 0.729166
Target:  5'- cCGACGCUGUgacCAAGcugGCCcGCGucaagGGCCg -3'
miRNA:   3'- uGCUGCGAUAa--GUUC---UGGaCGU-----UCGG- -5'
26654 3' -50.2 NC_005808.1 + 29411 0.69 0.729166
Target:  5'- cCGGCGCgugGUUCGAGgacuugGCCgGCGAccGCCa -3'
miRNA:   3'- uGCUGCGa--UAAGUUC------UGGaCGUU--CGG- -5'
26654 3' -50.2 NC_005808.1 + 9537 0.69 0.728042
Target:  5'- uGCGGCcCUGUUCGGccagugcGAUCUGCucGCCg -3'
miRNA:   3'- -UGCUGcGAUAAGUU-------CUGGACGuuCGG- -5'
26654 3' -50.2 NC_005808.1 + 674 0.69 0.717884
Target:  5'- cACGGCGCUGcuggccGACCcGCAGGCg -3'
miRNA:   3'- -UGCUGCGAUaaguu-CUGGaCGUUCGg -5'
26654 3' -50.2 NC_005808.1 + 2727 0.69 0.717884
Target:  5'- uCGAUGCguaccgCAAGACCUcgcacgGCAAGCg -3'
miRNA:   3'- uGCUGCGauaa--GUUCUGGA------CGUUCGg -5'
26654 3' -50.2 NC_005808.1 + 7436 0.69 0.717884
Target:  5'- aACGACGUgAUUCAcGACCUGgCGuGGCa -3'
miRNA:   3'- -UGCUGCGaUAAGUuCUGGAC-GU-UCGg -5'
26654 3' -50.2 NC_005808.1 + 16508 0.69 0.717884
Target:  5'- uACGACGCcgUGUUCAAcGCCgccgGCGauuaccccgcGGCCg -3'
miRNA:   3'- -UGCUGCG--AUAAGUUcUGGa---CGU----------UCGG- -5'
26654 3' -50.2 NC_005808.1 + 12682 0.69 0.717884
Target:  5'- -aGGCGCgugUCGAGGCCcGCcuugauAGCCu -3'
miRNA:   3'- ugCUGCGauaAGUUCUGGaCGu-----UCGG- -5'
26654 3' -50.2 NC_005808.1 + 31009 0.7 0.695047
Target:  5'- cGCGAC-CUGUcCAcGGGCUUGCcGGCCg -3'
miRNA:   3'- -UGCUGcGAUAaGU-UCUGGACGuUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.