miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26656 3' -60.7 NC_005808.1 + 26327 0.66 0.399948
Target:  5'- aGCCgACCAgGccGGCGGgu-GCCCGUGc -3'
miRNA:   3'- gCGGgUGGUgC--UCGUCaagCGGGCGC- -5'
26656 3' -60.7 NC_005808.1 + 38864 0.66 0.399948
Target:  5'- cCGCCCucaucaaauCCGCGAGCAugagcGgaUGCgCCGCa -3'
miRNA:   3'- -GCGGGu--------GGUGCUCGU-----CaaGCG-GGCGc -5'
26656 3' -60.7 NC_005808.1 + 29313 0.66 0.399948
Target:  5'- uGCCCAgCACuucaaGGCGGUggcggUCGCCgGCc -3'
miRNA:   3'- gCGGGUgGUGc----UCGUCA-----AGCGGgCGc -5'
26656 3' -60.7 NC_005808.1 + 2211 0.66 0.391043
Target:  5'- aCGCCCucgucggguagcACCACGcgcAGCAGgcggCGCguggCCGCGc -3'
miRNA:   3'- -GCGGG------------UGGUGC---UCGUCaa--GCG----GGCGC- -5'
26656 3' -60.7 NC_005808.1 + 11601 0.66 0.391043
Target:  5'- gGCUgGCCGcCGGGCAGcagUGCCaGCGg -3'
miRNA:   3'- gCGGgUGGU-GCUCGUCaa-GCGGgCGC- -5'
26656 3' -60.7 NC_005808.1 + 38622 0.66 0.382268
Target:  5'- cCGgCCGCgGCGAGCGGcagGCCaGCGg -3'
miRNA:   3'- -GCgGGUGgUGCUCGUCaagCGGgCGC- -5'
26656 3' -60.7 NC_005808.1 + 3224 0.66 0.373625
Target:  5'- uGCCCGCCACGAuGaauaaUUCGaCCUGCc -3'
miRNA:   3'- gCGGGUGGUGCU-Cguc--AAGC-GGGCGc -5'
26656 3' -60.7 NC_005808.1 + 24576 0.66 0.373625
Target:  5'- gGCCgGCCACGGuCGGgcCGUCCgGCGu -3'
miRNA:   3'- gCGGgUGGUGCUcGUCaaGCGGG-CGC- -5'
26656 3' -60.7 NC_005808.1 + 17847 0.66 0.373625
Target:  5'- uGCCCGCCACcguGGCcucgUCGCCCa-- -3'
miRNA:   3'- gCGGGUGGUGc--UCGuca-AGCGGGcgc -5'
26656 3' -60.7 NC_005808.1 + 25241 0.66 0.365116
Target:  5'- aGCCCAUgACGAagcGCAccugUUGCUCGCGc -3'
miRNA:   3'- gCGGGUGgUGCU---CGUca--AGCGGGCGC- -5'
26656 3' -60.7 NC_005808.1 + 27418 0.66 0.365116
Target:  5'- uCGCgCGCCugGcGCAccgCGCCCgGCGg -3'
miRNA:   3'- -GCGgGUGGugCuCGUcaaGCGGG-CGC- -5'
26656 3' -60.7 NC_005808.1 + 15110 0.66 0.365116
Target:  5'- uGCCCGCaucaaCGCGGGCA--UCGCCaacaccaaCGCGg -3'
miRNA:   3'- gCGGGUG-----GUGCUCGUcaAGCGG--------GCGC- -5'
26656 3' -60.7 NC_005808.1 + 23586 0.66 0.365116
Target:  5'- uGCgCCGCCugGAa-GGcgCGCUCGCGg -3'
miRNA:   3'- gCG-GGUGGugCUcgUCaaGCGGGCGC- -5'
26656 3' -60.7 NC_005808.1 + 37989 0.66 0.356741
Target:  5'- cCGCCgacaucauCGCCGaggcCGAGCAGUuccUCGCCUgGCGc -3'
miRNA:   3'- -GCGG--------GUGGU----GCUCGUCA---AGCGGG-CGC- -5'
26656 3' -60.7 NC_005808.1 + 10985 0.66 0.356741
Target:  5'- gGCCCugCaaaccgGCGGGCAGgUCGCCauuccgGUGg -3'
miRNA:   3'- gCGGGugG------UGCUCGUCaAGCGGg-----CGC- -5'
26656 3' -60.7 NC_005808.1 + 26737 0.67 0.348503
Target:  5'- gGgCCACCGCcAGCg---CGCCCGCu -3'
miRNA:   3'- gCgGGUGGUGcUCGucaaGCGGGCGc -5'
26656 3' -60.7 NC_005808.1 + 11491 0.67 0.348503
Target:  5'- uCGCCugcgaCACCGCaaaGGGCAG--CGCCUGCGc -3'
miRNA:   3'- -GCGG-----GUGGUG---CUCGUCaaGCGGGCGC- -5'
26656 3' -60.7 NC_005808.1 + 3558 0.67 0.348503
Target:  5'- uGCgUACUgguacaGCGGGCcGUcgaacUCGCCCGCGa -3'
miRNA:   3'- gCGgGUGG------UGCUCGuCA-----AGCGGGCGC- -5'
26656 3' -60.7 NC_005808.1 + 24729 0.67 0.346058
Target:  5'- gGCCCGCgGCGGGCGcgacaacaccauccUGCCCGCc -3'
miRNA:   3'- gCGGGUGgUGCUCGUcaa-----------GCGGGCGc -5'
26656 3' -60.7 NC_005808.1 + 17420 0.67 0.340401
Target:  5'- gCGCCCAcgucgcCCuuGAGCAGUggcCCCGCc -3'
miRNA:   3'- -GCGGGU------GGugCUCGUCAagcGGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.