miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26659 3' -60.5 NC_005808.1 + 11226 1.13 0.000105
Target:  5'- aGCGCACGCAACGUGCGCAGGCGGCCCa -3'
miRNA:   3'- -CGCGUGCGUUGCACGCGUCCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 11503 0.72 0.158529
Target:  5'- cCGCAaaggGCAGCGccUGCGCuGGCgugaGGCCCu -3'
miRNA:   3'- cGCGUg---CGUUGC--ACGCGuCCG----CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 11588 0.7 0.211581
Target:  5'- cCGCuCGCAgggccucACGccaGCGCAGGCGcuGCCCu -3'
miRNA:   3'- cGCGuGCGU-------UGCa--CGCGUCCGC--CGGG- -5'
26659 3' -60.5 NC_005808.1 + 11671 0.71 0.191034
Target:  5'- cCGCugGCAcugcugcccgGCG-GCcaGCcGGCGGCCCu -3'
miRNA:   3'- cGCGugCGU----------UGCaCG--CGuCCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 12140 0.67 0.348833
Target:  5'- cGCGcCACGCGcuGCGcuuccGCGUAGGCGucggggucaguGUCCg -3'
miRNA:   3'- -CGC-GUGCGU--UGCa----CGCGUCCGC-----------CGGG- -5'
26659 3' -60.5 NC_005808.1 + 12286 0.66 0.382739
Target:  5'- uUGCugGCccAGCGUGCcgGCuacGGCGGCg- -3'
miRNA:   3'- cGCGugCG--UUGCACG--CGu--CCGCCGgg -5'
26659 3' -60.5 NC_005808.1 + 13070 0.67 0.309542
Target:  5'- uGCGCuGCGCGGCcUGUacgagaacgGCGGGCGGUUUu -3'
miRNA:   3'- -CGCG-UGCGUUGcACG---------CGUCCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 13302 0.67 0.348833
Target:  5'- aGCGCGCcggggcCGGCGU-UGUAGGCGGCg- -3'
miRNA:   3'- -CGCGUGc-----GUUGCAcGCGUCCGCCGgg -5'
26659 3' -60.5 NC_005808.1 + 13632 0.71 0.167269
Target:  5'- aGCGCGCGUucaacaucgcCGUGgGCaccgagucAGGCGGCCg -3'
miRNA:   3'- -CGCGUGCGuu--------GCACgCG--------UCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 14386 0.66 0.382739
Target:  5'- cGCGCcgcggaacguagGCGUAGCGaagcuggGCGUcgccAGGCGcGCCUg -3'
miRNA:   3'- -CGCG------------UGCGUUGCa------CGCG----UCCGC-CGGG- -5'
26659 3' -60.5 NC_005808.1 + 14905 0.66 0.400495
Target:  5'- uGCGCG-GCGAUcUGCuGCuGGCcGGCCUc -3'
miRNA:   3'- -CGCGUgCGUUGcACG-CGuCCG-CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 15141 0.67 0.317123
Target:  5'- aUGCugGCGGCGgaUGCGCccaGGGCgacGGCUg -3'
miRNA:   3'- cGCGugCGUUGC--ACGCG---UCCG---CCGGg -5'
26659 3' -60.5 NC_005808.1 + 15904 0.66 0.398696
Target:  5'- -aGCACGacacggaCGGCGUguucgaguccugcGCGguGGUGGCCg -3'
miRNA:   3'- cgCGUGC-------GUUGCA-------------CGCguCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 16061 0.7 0.217711
Target:  5'- cGCGCACGUGGCcgcCGCGcGCGGCgCCg -3'
miRNA:   3'- -CGCGUGCGUUGcacGCGUcCGCCG-GG- -5'
26659 3' -60.5 NC_005808.1 + 16125 0.74 0.118764
Target:  5'- cGCGCGCgGCGgccACGUGCGCGaacuggccuacaacuGGCaGGCCa -3'
miRNA:   3'- -CGCGUG-CGU---UGCACGCGU---------------CCG-CCGGg -5'
26659 3' -60.5 NC_005808.1 + 16629 0.68 0.294798
Target:  5'- cGCGuCGCGCuacAACGUcuauaaggaGCaAGGCGGCCUg -3'
miRNA:   3'- -CGC-GUGCG---UUGCAcg-------CG-UCCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 17074 0.67 0.324842
Target:  5'- cGCGCACGaagGCGaagccgGCGCGGuucuCGGCCg -3'
miRNA:   3'- -CGCGUGCgu-UGCa-----CGCGUCc---GCCGGg -5'
26659 3' -60.5 NC_005808.1 + 17445 0.66 0.382739
Target:  5'- uGCGUcgGCGCGAUGcaggcauaccUGuCGCAGGCGaugguGUCCg -3'
miRNA:   3'- -CGCG--UGCGUUGC----------AC-GCGUCCGC-----CGGG- -5'
26659 3' -60.5 NC_005808.1 + 17634 0.66 0.400495
Target:  5'- uUGC-CGCAuCGUGCgGCAGuaCGGCCa -3'
miRNA:   3'- cGCGuGCGUuGCACG-CGUCc-GCCGGg -5'
26659 3' -60.5 NC_005808.1 + 17784 0.7 0.195614
Target:  5'- aUGCGCGCAGCuUGcCGCgauGGGCauuucccGGCCCg -3'
miRNA:   3'- cGCGUGCGUUGcAC-GCG---UCCG-------CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.