miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26659 3' -60.5 NC_005808.1 + 5605 0.67 0.348013
Target:  5'- -gGCGgGCGACcUGgGCggaaccuGGGCGGCCg -3'
miRNA:   3'- cgCGUgCGUUGcACgCG-------UCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 6322 0.66 0.35544
Target:  5'- cGCGCAgaucaacCGCAcCGUuaccggcGUGCAGGCccuGGCCg -3'
miRNA:   3'- -CGCGU-------GCGUuGCA-------CGCGUCCG---CCGGg -5'
26659 3' -60.5 NC_005808.1 + 6372 0.7 0.223414
Target:  5'- gGCcCACGuCGGCaaucagGCGCAGGCcggccGGCCCg -3'
miRNA:   3'- -CGcGUGC-GUUGca----CGCGUCCG-----CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 6928 0.67 0.309542
Target:  5'- aCGUGC-CGACGUG-GUGGGgGGCCUa -3'
miRNA:   3'- cGCGUGcGUUGCACgCGUCCgCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 7175 0.69 0.25386
Target:  5'- gGCauCACGCAGuccauCGUGCGCguGGGCGcGCCg -3'
miRNA:   3'- -CGc-GUGCGUU-----GCACGCG--UCCGC-CGGg -5'
26659 3' -60.5 NC_005808.1 + 7472 0.69 0.24751
Target:  5'- uGCGcCGCGUAGUG-GCGguGGUauaGGCCCc -3'
miRNA:   3'- -CGC-GUGCGUUGCaCGCguCCG---CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 7796 0.69 0.235203
Target:  5'- uGCGCAgGaauggcaAGCG-GUGCAGGCGGUg- -3'
miRNA:   3'- -CGCGUgCg------UUGCaCGCGUCCGCCGgg -5'
26659 3' -60.5 NC_005808.1 + 8114 0.77 0.065213
Target:  5'- gGCGCGCGUcaugGACG-GCgGCAaggacGGCGGCCCu -3'
miRNA:   3'- -CGCGUGCG----UUGCaCG-CGU-----CCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 8224 0.74 0.117138
Target:  5'- cGCGCugGuCGGCGgccgucagcagcuUGCGCuucaaGCGGCCCa -3'
miRNA:   3'- -CGCGugC-GUUGC-------------ACGCGuc---CGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 8392 0.69 0.229245
Target:  5'- cGCGCugGCuGCGUaGC-CAGuCGGCCa -3'
miRNA:   3'- -CGCGugCGuUGCA-CGcGUCcGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 8750 0.72 0.150202
Target:  5'- gGCGCGCGCGuauucACGUGCcgcuucggGCAGcacGCGGCgCa -3'
miRNA:   3'- -CGCGUGCGU-----UGCACG--------CGUC---CGCCGgG- -5'
26659 3' -60.5 NC_005808.1 + 8885 0.67 0.340698
Target:  5'- gGCGCGgGCAucauugugaAUG-GCGCuaucGGCGGCgCg -3'
miRNA:   3'- -CGCGUgCGU---------UGCaCGCGu---CCGCCGgG- -5'
26659 3' -60.5 NC_005808.1 + 8902 0.7 0.212132
Target:  5'- cGCGCugGCccGCGU-UGC-GGCuGGCCCg -3'
miRNA:   3'- -CGCGugCGu-UGCAcGCGuCCG-CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 8997 0.67 0.324064
Target:  5'- cGC-CGCGCGGgG-GCGCuuccagcAGGCGGCgCa -3'
miRNA:   3'- -CGcGUGCGUUgCaCGCG-------UCCGCCGgG- -5'
26659 3' -60.5 NC_005808.1 + 9219 0.75 0.099464
Target:  5'- gGCGCACGUucuGCG-GCGCGcccGGCGGCa- -3'
miRNA:   3'- -CGCGUGCGu--UGCaCGCGU---CCGCCGgg -5'
26659 3' -60.5 NC_005808.1 + 9282 0.7 0.201343
Target:  5'- gGCGCGcCGCAgaACGUGCGCcGcGCcGCCg -3'
miRNA:   3'- -CGCGU-GCGU--UGCACGCGuC-CGcCGGg -5'
26659 3' -60.5 NC_005808.1 + 9324 0.75 0.088946
Target:  5'- gGCGCACGuCGGCGcG-GCGGGCGGCg- -3'
miRNA:   3'- -CGCGUGC-GUUGCaCgCGUCCGCCGgg -5'
26659 3' -60.5 NC_005808.1 + 9382 0.69 0.229245
Target:  5'- cCGCGC-CGACGUGCGCcgccAGGUcGCCg -3'
miRNA:   3'- cGCGUGcGUUGCACGCG----UCCGcCGGg -5'
26659 3' -60.5 NC_005808.1 + 10601 0.66 0.400495
Target:  5'- uUGCGCGUGGCG-GCGgaaAGcGUGGCCg -3'
miRNA:   3'- cGCGUGCGUUGCaCGCg--UC-CGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 11166 0.86 0.013319
Target:  5'- uGCGCACGUuGCGUGCGCuGGuCGGCCg -3'
miRNA:   3'- -CGCGUGCGuUGCACGCGuCC-GCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.