miRNA display CGI


Results 21 - 40 of 146 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26659 3' -60.5 NC_005808.1 + 27824 0.73 0.120742
Target:  5'- cGCGCGCGCuGCccGCGguGGCgccGGCCg -3'
miRNA:   3'- -CGCGUGCGuUGcaCGCguCCG---CCGGg -5'
26659 3' -60.5 NC_005808.1 + 31775 0.73 0.124108
Target:  5'- cCGCGCGCGGCGgGCugguCAGGCGGUgCu -3'
miRNA:   3'- cGCGUGCGUUGCaCGc---GUCCGCCGgG- -5'
26659 3' -60.5 NC_005808.1 + 3463 0.73 0.131101
Target:  5'- cCGCGCGCcccGAUGUuCGCGGGCgaguucgacGGCCCg -3'
miRNA:   3'- cGCGUGCG---UUGCAcGCGUCCG---------CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 33067 0.73 0.138457
Target:  5'- uGCGCuucaucgggucGCGCAGCGa-CGC-GGCGGCCUa -3'
miRNA:   3'- -CGCG-----------UGCGUUGCacGCGuCCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 28648 0.73 0.138457
Target:  5'- cCGCGCGCAGugccagauCG-GUGCcGGCGGCCUc -3'
miRNA:   3'- cGCGUGCGUU--------GCaCGCGuCCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 38620 0.72 0.142275
Target:  5'- -gGC-CGCGGCGaGCgGCAGGCcagcGGCCCa -3'
miRNA:   3'- cgCGuGCGUUGCaCG-CGUCCG----CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 37246 0.72 0.14619
Target:  5'- uGCGUACGCuccACG-GCGCGgauGGCGGCg- -3'
miRNA:   3'- -CGCGUGCGu--UGCaCGCGU---CCGCCGgg -5'
26659 3' -60.5 NC_005808.1 + 34230 0.72 0.14619
Target:  5'- gGCGUcgcggaacaucgGCGCGAUGUcgGCGUcgAGGUGGCCUg -3'
miRNA:   3'- -CGCG------------UGCGUUGCA--CGCG--UCCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 8750 0.72 0.150202
Target:  5'- gGCGCGCGCGuauucACGUGCcgcuucggGCAGcacGCGGCgCa -3'
miRNA:   3'- -CGCGUGCGU-----UGCACG--------CGUC---CGCCGgG- -5'
26659 3' -60.5 NC_005808.1 + 39762 0.72 0.150202
Target:  5'- gGUGCugGCGcCGcUGCGCGuGGCcgcgagcaccuGGCCCg -3'
miRNA:   3'- -CGCGugCGUuGC-ACGCGU-CCG-----------CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 11503 0.72 0.158529
Target:  5'- cCGCAaaggGCAGCGccUGCGCuGGCgugaGGCCCu -3'
miRNA:   3'- cGCGUg---CGUUGC--ACGCGuCCG----CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 27418 0.72 0.158529
Target:  5'- uCGCGCGCcuGGCGcaccGCGCccGGCGGCCg -3'
miRNA:   3'- cGCGUGCG--UUGCa---CGCGu-CCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 41578 0.72 0.162846
Target:  5'- gGCGCGCGUAcuucauguugGCG-GCgGUAGGCGGCa- -3'
miRNA:   3'- -CGCGUGCGU----------UGCaCG-CGUCCGCCGgg -5'
26659 3' -60.5 NC_005808.1 + 41783 0.71 0.165931
Target:  5'- uGCGCGCGCucaagcccAgccaccugcugacgGCGauUGCGCA-GCGGCCCg -3'
miRNA:   3'- -CGCGUGCG--------U--------------UGC--ACGCGUcCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 13632 0.71 0.167269
Target:  5'- aGCGCGCGUucaacaucgcCGUGgGCaccgagucAGGCGGCCg -3'
miRNA:   3'- -CGCGUGCGuu--------GCACgCG--------UCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 27574 0.71 0.167269
Target:  5'- cGCGUAaaggGCAcCG-GCaGCAGGCGGCgCCa -3'
miRNA:   3'- -CGCGUg---CGUuGCaCG-CGUCCGCCG-GG- -5'
26659 3' -60.5 NC_005808.1 + 37039 0.71 0.171342
Target:  5'- uCGCGCGUGGCGcgGCGCAgcuugcuGGUGGCUg -3'
miRNA:   3'- cGCGUGCGUUGCa-CGCGU-------CCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 669 0.71 0.186055
Target:  5'- cGCuGCugGcCGACc--CGCAGGCGGCCa -3'
miRNA:   3'- -CG-CGugC-GUUGcacGCGUCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 21406 0.71 0.186055
Target:  5'- uCGUugGCAACcuggGCGC-GGUGGCCg -3'
miRNA:   3'- cGCGugCGUUGca--CGCGuCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 30424 0.71 0.186055
Target:  5'- -gGCAUgGCGAUGaGCGCGGGCagGGCCUc -3'
miRNA:   3'- cgCGUG-CGUUGCaCGCGUCCG--CCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.