miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26659 3' -60.5 NC_005808.1 + 26117 0.66 0.365515
Target:  5'- aGCGCAUGgAGCGcgcccgccGCGCGGGCuuugauGCCa -3'
miRNA:   3'- -CGCGUGCgUUGCa-------CGCGUCCGc-----CGGg -5'
26659 3' -60.5 NC_005808.1 + 24117 0.66 0.360453
Target:  5'- uGCGCGCGUAGgggucguaguccagcCGgcUGCGCGccUGGCCCa -3'
miRNA:   3'- -CGCGUGCGUU---------------GC--ACGCGUccGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 37326 0.66 0.357105
Target:  5'- gGCGCA-GCAugGcaucGCGCuGcGUGGCCg -3'
miRNA:   3'- -CGCGUgCGUugCa---CGCGuC-CGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 34008 0.66 0.357105
Target:  5'- cGCGC-CGUAcucGCuGUGUGCA-GCGGCUg -3'
miRNA:   3'- -CGCGuGCGU---UG-CACGCGUcCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 27424 0.66 0.357105
Target:  5'- -gGCugGaCGA-GUGCuGCgAGGuCGGCCCg -3'
miRNA:   3'- cgCGugC-GUUgCACG-CG-UCC-GCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 3562 0.66 0.357105
Target:  5'- aGCGCA-GCAGCGggcuggGCGUAcaccgauccGCGGCCg -3'
miRNA:   3'- -CGCGUgCGUUGCa-----CGCGUc--------CGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 23523 0.66 0.357105
Target:  5'- -aGCGCGCcuuccaGGCG-GCGCAcGCGGUCg -3'
miRNA:   3'- cgCGUGCG------UUGCaCGCGUcCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 6322 0.66 0.35544
Target:  5'- cGCGCAgaucaacCGCAcCGUuaccggcGUGCAGGCccuGGCCg -3'
miRNA:   3'- -CGCGU-------GCGUuGCA-------CGCGUCCG---CCGGg -5'
26659 3' -60.5 NC_005808.1 + 12140 0.67 0.348833
Target:  5'- cGCGcCACGCGcuGCGcuuccGCGUAGGCGucggggucaguGUCCg -3'
miRNA:   3'- -CGC-GUGCGU--UGCa----CGCGUCCGC-----------CGGG- -5'
26659 3' -60.5 NC_005808.1 + 13302 0.67 0.348833
Target:  5'- aGCGCGCcggggcCGGCGU-UGUAGGCGGCg- -3'
miRNA:   3'- -CGCGUGc-----GUUGCAcGCGUCCGCCGgg -5'
26659 3' -60.5 NC_005808.1 + 5605 0.67 0.348013
Target:  5'- -gGCGgGCGACcUGgGCggaaccuGGGCGGCCg -3'
miRNA:   3'- cgCGUgCGUUGcACgCG-------UCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 29598 0.67 0.346378
Target:  5'- gGCGCGCGguuugccaguugucCAGCGccggGCGCuuGUGGCCg -3'
miRNA:   3'- -CGCGUGC--------------GUUGCa---CGCGucCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 8885 0.67 0.340698
Target:  5'- gGCGCGgGCAucauugugaAUG-GCGCuaucGGCGGCgCg -3'
miRNA:   3'- -CGCGUgCGU---------UGCaCGCGu---CCGCCGgG- -5'
26659 3' -60.5 NC_005808.1 + 2440 0.67 0.339892
Target:  5'- aCGCACGCgGGCGUcugccacGUGCAGGCcgaauugcGGCgCa -3'
miRNA:   3'- cGCGUGCG-UUGCA-------CGCGUCCG--------CCGgG- -5'
26659 3' -60.5 NC_005808.1 + 35128 0.67 0.3327
Target:  5'- cGUGCGCucgGCGGCGUGCuCGaucuGCGGCgCCa -3'
miRNA:   3'- -CGCGUG---CGUUGCACGcGUc---CGCCG-GG- -5'
26659 3' -60.5 NC_005808.1 + 28731 0.67 0.327969
Target:  5'- cGCGCugGCGAggccgcCGgcaccgaucuggcacUGCGCGGGaacuGGCCg -3'
miRNA:   3'- -CGCGugCGUU------GC---------------ACGCGUCCg---CCGGg -5'
26659 3' -60.5 NC_005808.1 + 17074 0.67 0.324842
Target:  5'- cGCGCACGaagGCGaagccgGCGCGGuucuCGGCCg -3'
miRNA:   3'- -CGCGUGCgu-UGCa-----CGCGUCc---GCCGGg -5'
26659 3' -60.5 NC_005808.1 + 8997 0.67 0.324064
Target:  5'- cGC-CGCGCGGgG-GCGCuuccagcAGGCGGCgCa -3'
miRNA:   3'- -CGcGUGCGUUgCaCGCG-------UCCGCCGgG- -5'
26659 3' -60.5 NC_005808.1 + 18066 0.67 0.317123
Target:  5'- gGCGCGgGguGCGUGC-UGGGCcGCCg -3'
miRNA:   3'- -CGCGUgCguUGCACGcGUCCGcCGGg -5'
26659 3' -60.5 NC_005808.1 + 15141 0.67 0.317123
Target:  5'- aUGCugGCGGCGgaUGCGCccaGGGCgacGGCUg -3'
miRNA:   3'- cGCGugCGUUGC--ACGCG---UCCG---CCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.