miRNA display CGI


Results 1 - 20 of 146 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26659 3' -60.5 NC_005808.1 + 11226 1.13 0.000105
Target:  5'- aGCGCACGCAACGUGCGCAGGCGGCCCa -3'
miRNA:   3'- -CGCGUGCGUUGCACGCGUCCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 11166 0.86 0.013319
Target:  5'- uGCGCACGUuGCGUGCGCuGGuCGGCCg -3'
miRNA:   3'- -CGCGUGCGuUGCACGCGuCC-GCCGGg -5'
26659 3' -60.5 NC_005808.1 + 37538 0.82 0.028365
Target:  5'- gGCGCcguugaACuGCAACGUgccGCGCAGGCGGCCg -3'
miRNA:   3'- -CGCG------UG-CGUUGCA---CGCGUCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 31044 0.78 0.0582
Target:  5'- cGCGCGgGcCAACGUGCGCGaa-GGCCCg -3'
miRNA:   3'- -CGCGUgC-GUUGCACGCGUccgCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 27874 0.77 0.06161
Target:  5'- aGCGCGCGCGaggACGUGCuGCGGcugcGCGGCgCg -3'
miRNA:   3'- -CGCGUGCGU---UGCACG-CGUC----CGCCGgG- -5'
26659 3' -60.5 NC_005808.1 + 507 0.77 0.06161
Target:  5'- uGCGC-CGCGGCG-GCuuGCAGGCGGUUCu -3'
miRNA:   3'- -CGCGuGCGUUGCaCG--CGUCCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 8114 0.77 0.065213
Target:  5'- gGCGCGCGUcaugGACG-GCgGCAaggacGGCGGCCCu -3'
miRNA:   3'- -CGCGUGCG----UUGCaCG-CGU-----CCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 28332 0.77 0.069019
Target:  5'- aGCGCGCGguCAugGUGCGCAacauGGUGaGCCUg -3'
miRNA:   3'- -CGCGUGC--GUugCACGCGU----CCGC-CGGG- -5'
26659 3' -60.5 NC_005808.1 + 37219 0.77 0.069806
Target:  5'- cGCGCAC-CAgugacauaacccuggGCGcgGUGCAGGCGGCCa -3'
miRNA:   3'- -CGCGUGcGU---------------UGCa-CGCGUCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 26818 0.76 0.075131
Target:  5'- uGCGCcuuauggaauCGCAGCGgGCGCGcuggcGGUGGCCCg -3'
miRNA:   3'- -CGCGu---------GCGUUGCaCGCGU-----CCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 27479 0.76 0.077282
Target:  5'- cGCGCACGCAccacGCGagGaUGCcGGCGGCCUc -3'
miRNA:   3'- -CGCGUGCGU----UGCa-C-GCGuCCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 9324 0.75 0.088946
Target:  5'- gGCGCACGuCGGCGcG-GCGGGCGGCg- -3'
miRNA:   3'- -CGCGUGC-GUUGCaCgCGUCCGCCGgg -5'
26659 3' -60.5 NC_005808.1 + 9219 0.75 0.099464
Target:  5'- gGCGCACGUucuGCG-GCGCGcccGGCGGCa- -3'
miRNA:   3'- -CGCGUGCGu--UGCaCGCGU---CCGCCGgg -5'
26659 3' -60.5 NC_005808.1 + 24555 0.74 0.114264
Target:  5'- cGCGCAgCGCGGCGaugGCG-AGGCcGGCCa -3'
miRNA:   3'- -CGCGU-GCGUUGCa--CGCgUCCG-CCGGg -5'
26659 3' -60.5 NC_005808.1 + 8224 0.74 0.117138
Target:  5'- cGCGCugGuCGGCGgccgucagcagcuUGCGCuucaaGCGGCCCa -3'
miRNA:   3'- -CGCGugC-GUUGC-------------ACGCGuc---CGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 42140 0.74 0.117462
Target:  5'- uCGCugGCcgaauaccucgGACGUGCGCGGGCcGCUg -3'
miRNA:   3'- cGCGugCG-----------UUGCACGCGUCCGcCGGg -5'
26659 3' -60.5 NC_005808.1 + 28625 0.74 0.117462
Target:  5'- cGUGCGCGCcGCGaUG-GCcGGCGGCCg -3'
miRNA:   3'- -CGCGUGCGuUGC-ACgCGuCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 16125 0.74 0.118764
Target:  5'- cGCGCGCgGCGgccACGUGCGCGaacuggccuacaacuGGCaGGCCa -3'
miRNA:   3'- -CGCGUG-CGU---UGCACGCGU---------------CCG-CCGGg -5'
26659 3' -60.5 NC_005808.1 + 27824 0.73 0.120742
Target:  5'- cGCGCGCGCuGCccGCGguGGCgccGGCCg -3'
miRNA:   3'- -CGCGUGCGuUGcaCGCguCCG---CCGGg -5'
26659 3' -60.5 NC_005808.1 + 18845 0.73 0.120742
Target:  5'- cGCgGCAUGUAGaagGC-CGGGCGGCCCa -3'
miRNA:   3'- -CG-CGUGCGUUgcaCGcGUCCGCCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.