miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26659 3' -60.5 NC_005808.1 + 334 0.68 0.280606
Target:  5'- -gGCugGCGgugGCGUcGCGCagcAGGCcguccgccaGGCCCg -3'
miRNA:   3'- cgCGugCGU---UGCA-CGCG---UCCG---------CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 507 0.77 0.06161
Target:  5'- uGCGC-CGCGGCG-GCuuGCAGGCGGUUCu -3'
miRNA:   3'- -CGCGuGCGUUGCaCG--CGUCCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 520 0.66 0.37406
Target:  5'- aGCGCcCGCAAgcUGgccGCGCAG-CaGCCCa -3'
miRNA:   3'- -CGCGuGCGUU--GCa--CGCGUCcGcCGGG- -5'
26659 3' -60.5 NC_005808.1 + 669 0.71 0.186055
Target:  5'- cGCuGCugGcCGACc--CGCAGGCGGCCa -3'
miRNA:   3'- -CG-CGugC-GUUGcacGCGUCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 750 0.71 0.191034
Target:  5'- gGCGCcCGgcCGGCGccGcCGUAGGCGGCCUg -3'
miRNA:   3'- -CGCGuGC--GUUGCa-C-GCGUCCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 1081 0.68 0.285511
Target:  5'- aCGCGCGCGGuagauugccuuggcCGUGuCGCGcGGCaugucgcgcaucGGCCCg -3'
miRNA:   3'- cGCGUGCGUU--------------GCAC-GCGU-CCG------------CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 1357 0.68 0.273716
Target:  5'- cUGgGCGCGGCG-GUGUGGGCGGgCa -3'
miRNA:   3'- cGCgUGCGUUGCaCGCGUCCGCCgGg -5'
26659 3' -60.5 NC_005808.1 + 1687 0.66 0.381865
Target:  5'- cGCGCAgGUAGucgagaaauucgcCGUGgGCcGGCGuGCCg -3'
miRNA:   3'- -CGCGUgCGUU-------------GCACgCGuCCGC-CGGg -5'
26659 3' -60.5 NC_005808.1 + 2022 0.68 0.302101
Target:  5'- uCGCugGCGAaGUcGCGCAGGCgauagaacacGGCgCg -3'
miRNA:   3'- cGCGugCGUUgCA-CGCGUCCG----------CCGgG- -5'
26659 3' -60.5 NC_005808.1 + 2226 0.66 0.391552
Target:  5'- -aGCAC-C-ACGcGCaGCAGGCGGCgCg -3'
miRNA:   3'- cgCGUGcGuUGCaCG-CGUCCGCCGgG- -5'
26659 3' -60.5 NC_005808.1 + 2372 0.68 0.273716
Target:  5'- cUGCACGUGgcagacgcccGCGUGCGUacccuugucaGGGCGGCa- -3'
miRNA:   3'- cGCGUGCGU----------UGCACGCG----------UCCGCCGgg -5'
26659 3' -60.5 NC_005808.1 + 2417 0.68 0.287633
Target:  5'- aGCGUAgGUGuACG-GCaGCAGGCcGGCCUc -3'
miRNA:   3'- -CGCGUgCGU-UGCaCG-CGUCCG-CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 2440 0.67 0.339892
Target:  5'- aCGCACGCgGGCGUcugccacGUGCAGGCcgaauugcGGCgCa -3'
miRNA:   3'- cGCGUGCG-UUGCA-------CGCGUCCG--------CCGgG- -5'
26659 3' -60.5 NC_005808.1 + 2466 0.68 0.273716
Target:  5'- uUGCACaaGGCGUGCuGCacaAGGCGGUCUu -3'
miRNA:   3'- cGCGUGcgUUGCACG-CG---UCCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 3463 0.73 0.131101
Target:  5'- cCGCGCGCcccGAUGUuCGCGGGCgaguucgacGGCCCg -3'
miRNA:   3'- cGCGUGCG---UUGCAcGCGUCCG---------CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 3562 0.66 0.357105
Target:  5'- aGCGCA-GCAGCGggcuggGCGUAcaccgauccGCGGCCg -3'
miRNA:   3'- -CGCGUgCGUUGCa-----CGCGUc--------CGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 4097 0.7 0.195614
Target:  5'- uGCGCucgacccGCGCGGCaUGaCGCuGGUGGCCg -3'
miRNA:   3'- -CGCG-------UGCGUUGcAC-GCGuCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 4190 0.68 0.266963
Target:  5'- uGCGCcgggaaGCAACGcugcaGCGCAGGCuGGCg- -3'
miRNA:   3'- -CGCGug----CGUUGCa----CGCGUCCG-CCGgg -5'
26659 3' -60.5 NC_005808.1 + 4517 0.7 0.196129
Target:  5'- gGCGCccgugaACGUGGCGUGC-UGGGCGGUCg -3'
miRNA:   3'- -CGCG------UGCGUUGCACGcGUCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 4581 0.67 0.309542
Target:  5'- -aGCACGCcACGUuCaCGGGCGccGCCCg -3'
miRNA:   3'- cgCGUGCGuUGCAcGcGUCCGC--CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.