miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26659 3' -60.5 NC_005808.1 + 42140 0.74 0.117462
Target:  5'- uCGCugGCcgaauaccucgGACGUGCGCGGGCcGCUg -3'
miRNA:   3'- cGCGugCG-----------UUGCACGCGUCCGcCGGg -5'
26659 3' -60.5 NC_005808.1 + 41783 0.71 0.165931
Target:  5'- uGCGCGCGCucaagcccAgccaccugcugacgGCGauUGCGCA-GCGGCCCg -3'
miRNA:   3'- -CGCGUGCG--------U--------------UGC--ACGCGUcCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 41608 0.67 0.309542
Target:  5'- gGCGCGgGCAGCGggcugacgGUGaaGGGCuGGCUCg -3'
miRNA:   3'- -CGCGUgCGUUGCa-------CGCg-UCCG-CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 41578 0.72 0.162846
Target:  5'- gGCGCGCGUAcuucauguugGCG-GCgGUAGGCGGCa- -3'
miRNA:   3'- -CGCGUGCGU----------UGCaCG-CGUCCGCCGgg -5'
26659 3' -60.5 NC_005808.1 + 40836 0.68 0.294798
Target:  5'- cCGaCGCGCca-G-GCGCAGGCcGGCCa -3'
miRNA:   3'- cGC-GUGCGuugCaCGCGUCCG-CCGGg -5'
26659 3' -60.5 NC_005808.1 + 39888 0.73 0.120742
Target:  5'- cCGaCACcuCGACGuUGCGCAGGUGcGCCCa -3'
miRNA:   3'- cGC-GUGc-GUUGC-ACGCGUCCGC-CGGG- -5'
26659 3' -60.5 NC_005808.1 + 39836 0.68 0.273716
Target:  5'- gGUGCuCGCGGCcacGCGCA-GCGGCgCCa -3'
miRNA:   3'- -CGCGuGCGUUGca-CGCGUcCGCCG-GG- -5'
26659 3' -60.5 NC_005808.1 + 39762 0.72 0.150202
Target:  5'- gGUGCugGCGcCGcUGCGCGuGGCcgcgagcaccuGGCCCg -3'
miRNA:   3'- -CGCGugCGUuGC-ACGCGU-CCG-----------CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 39660 0.69 0.241291
Target:  5'- cGUGcCGCGCGACGcgGUGUGGGcCGGCa- -3'
miRNA:   3'- -CGC-GUGCGUUGCa-CGCGUCC-GCCGgg -5'
26659 3' -60.5 NC_005808.1 + 39051 0.66 0.382739
Target:  5'- gGCGCgguugGCGgGAC-UGCGCGGuguGCGGCUg -3'
miRNA:   3'- -CGCG-----UGCgUUGcACGCGUC---CGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 38620 0.72 0.142275
Target:  5'- -gGC-CGCGGCGaGCgGCAGGCcagcGGCCCa -3'
miRNA:   3'- cgCGuGCGUUGCaCG-CGUCCG----CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 38391 0.7 0.217147
Target:  5'- cCGCAagcCGCGACGUGCucgcggccaacauGCccgccaucgAGGCGGCCg -3'
miRNA:   3'- cGCGU---GCGUUGCACG-------------CG---------UCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 38157 0.66 0.391552
Target:  5'- cCGCACGCcuGGCG-GUGUu-GCGGCCg -3'
miRNA:   3'- cGCGUGCG--UUGCaCGCGucCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 37955 0.68 0.287633
Target:  5'- ---gACGCGAUGgccGaCGCAGcGUGGCCCa -3'
miRNA:   3'- cgcgUGCGUUGCa--C-GCGUC-CGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 37538 0.82 0.028365
Target:  5'- gGCGCcguugaACuGCAACGUgccGCGCAGGCGGCCg -3'
miRNA:   3'- -CGCG------UG-CGUUGCA---CGCGUCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 37326 0.66 0.357105
Target:  5'- gGCGCA-GCAugGcaucGCGCuGcGUGGCCg -3'
miRNA:   3'- -CGCGUgCGUugCa---CGCGuC-CGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 37246 0.72 0.14619
Target:  5'- uGCGUACGCuccACG-GCGCGgauGGCGGCg- -3'
miRNA:   3'- -CGCGUGCGu--UGCaCGCGU---CCGCCGgg -5'
26659 3' -60.5 NC_005808.1 + 37219 0.77 0.069806
Target:  5'- cGCGCAC-CAgugacauaacccuggGCGcgGUGCAGGCGGCCa -3'
miRNA:   3'- -CGCGUGcGU---------------UGCa-CGCGUCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 37039 0.71 0.171342
Target:  5'- uCGCGCGUGGCGcgGCGCAgcuugcuGGUGGCUg -3'
miRNA:   3'- cGCGUGCGUUGCa-CGCGU-------CCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 36488 0.69 0.25386
Target:  5'- aGCGCAggccggucuugcCGCAGCGUuuGCAGGUgacGGCgCg -3'
miRNA:   3'- -CGCGU------------GCGUUGCAcgCGUCCG---CCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.