miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26659 3' -60.5 NC_005808.1 + 36147 0.69 0.241291
Target:  5'- uGCGCGacgGCGACGccuuCGCGGGCGGUg- -3'
miRNA:   3'- -CGCGUg--CGUUGCac--GCGUCCGCCGgg -5'
26659 3' -60.5 NC_005808.1 + 35976 0.67 0.317123
Target:  5'- cCGCGCGCAGCGccacGCGCccGCuGGUCa -3'
miRNA:   3'- cGCGUGCGUUGCa---CGCGucCG-CCGGg -5'
26659 3' -60.5 NC_005808.1 + 35128 0.67 0.3327
Target:  5'- cGUGCGCucgGCGGCGUGCuCGaucuGCGGCgCCa -3'
miRNA:   3'- -CGCGUG---CGUUGCACGcGUc---CGCCG-GG- -5'
26659 3' -60.5 NC_005808.1 + 34481 0.69 0.260344
Target:  5'- gGCGCugGCGuccugcccguuCGUcaGCGaCAuGGCGGCCa -3'
miRNA:   3'- -CGCGugCGUu----------GCA--CGC-GU-CCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 34293 0.68 0.294798
Target:  5'- aGCaGCGCGCAcCGcugGCugcacugccccgGCAGcGUGGCCCu -3'
miRNA:   3'- -CG-CGUGCGUuGCa--CG------------CGUC-CGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 34230 0.72 0.14619
Target:  5'- gGCGUcgcggaacaucgGCGCGAUGUcgGCGUcgAGGUGGCCUg -3'
miRNA:   3'- -CGCG------------UGCGUUGCA--CGCG--UCCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 34008 0.66 0.357105
Target:  5'- cGCGC-CGUAcucGCuGUGUGCA-GCGGCUg -3'
miRNA:   3'- -CGCGuGCGU---UG-CACGCGUcCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 33067 0.73 0.138457
Target:  5'- uGCGCuucaucgggucGCGCAGCGa-CGC-GGCGGCCUa -3'
miRNA:   3'- -CGCG-----------UGCGUUGCacGCGuCCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 32468 0.68 0.302101
Target:  5'- -gGCGCGCGGCuuuuuuucgGUGCuggcuuccuGCuGGGCGGCCg -3'
miRNA:   3'- cgCGUGCGUUG---------CACG---------CG-UCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 31775 0.73 0.124108
Target:  5'- cCGCGCGCGGCGgGCugguCAGGCGGUgCu -3'
miRNA:   3'- cGCGUGCGUUGCaCGc---GUCCGCCGgG- -5'
26659 3' -60.5 NC_005808.1 + 31681 0.67 0.316359
Target:  5'- uGC-CACGCuGCGUaaaGCaGCAGGUagggccagaagcaGGCCCa -3'
miRNA:   3'- -CGcGUGCGuUGCA---CG-CGUCCG-------------CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 31301 0.68 0.266963
Target:  5'- aGC-CugGCGACc-GCGU-GGUGGCCCg -3'
miRNA:   3'- -CGcGugCGUUGcaCGCGuCCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 31044 0.78 0.0582
Target:  5'- cGCGCGgGcCAACGUGCGCGaa-GGCCCg -3'
miRNA:   3'- -CGCGUgC-GUUGCACGCGUccgCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 30424 0.71 0.186055
Target:  5'- -gGCAUgGCGAUGaGCGCGGGCagGGCCUc -3'
miRNA:   3'- cgCGUG-CGUUGCaCGCGUCCG--CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 30283 0.67 0.317123
Target:  5'- uCGC-CGaguGCGUGCGCGugcucaagcccGGCGGCUa -3'
miRNA:   3'- cGCGuGCgu-UGCACGCGU-----------CCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 30198 0.66 0.382739
Target:  5'- gGUGCAgGcCGGCG-GCGUguucuGGcGCGGCCUc -3'
miRNA:   3'- -CGCGUgC-GUUGCaCGCG-----UC-CGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 29598 0.67 0.346378
Target:  5'- gGCGCGCGguuugccaguugucCAGCGccggGCGCuuGUGGCCg -3'
miRNA:   3'- -CGCGUGC--------------GUUGCa---CGCGucCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 29496 0.69 0.229245
Target:  5'- cUGgGCGCGACGUGCGagcgcguGGGCaacgcGCCCa -3'
miRNA:   3'- cGCgUGCGUUGCACGCg------UCCGc----CGGG- -5'
26659 3' -60.5 NC_005808.1 + 28731 0.67 0.327969
Target:  5'- cGCGCugGCGAggccgcCGgcaccgaucuggcacUGCGCGGGaacuGGCCg -3'
miRNA:   3'- -CGCGugCGUU------GC---------------ACGCGUCCg---CCGGg -5'
26659 3' -60.5 NC_005808.1 + 28724 0.68 0.294798
Target:  5'- gGCGCACGCGAgGaugaGCGCcuuGGCaucGUCCa -3'
miRNA:   3'- -CGCGUGCGUUgCa---CGCGu--CCGc--CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.