miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26659 3' -60.5 NC_005808.1 + 4097 0.7 0.195614
Target:  5'- uGCGCucgacccGCGCGGCaUGaCGCuGGUGGCCg -3'
miRNA:   3'- -CGCG-------UGCGUUGcAC-GCGuCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 750 0.71 0.191034
Target:  5'- gGCGCcCGgcCGGCGccGcCGUAGGCGGCCUg -3'
miRNA:   3'- -CGCGuGC--GUUGCa-C-GCGUCCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 31775 0.73 0.124108
Target:  5'- cCGCGCGCGGCGgGCugguCAGGCGGUgCu -3'
miRNA:   3'- cGCGUGCGUUGCaCGc---GUCCGCCGgG- -5'
26659 3' -60.5 NC_005808.1 + 8114 0.77 0.065213
Target:  5'- gGCGCGCGUcaugGACG-GCgGCAaggacGGCGGCCCu -3'
miRNA:   3'- -CGCGUGCG----UUGCaCG-CGU-----CCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 7175 0.69 0.25386
Target:  5'- gGCauCACGCAGuccauCGUGCGCguGGGCGcGCCg -3'
miRNA:   3'- -CGc-GUGCGUU-----GCACGCG--UCCGC-CGGg -5'
26659 3' -60.5 NC_005808.1 + 25902 0.7 0.217711
Target:  5'- -aGCAUGgAACugaccgGCGCcaacGGCGGCCCg -3'
miRNA:   3'- cgCGUGCgUUGca----CGCGu---CCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 669 0.71 0.186055
Target:  5'- cGCuGCugGcCGACc--CGCAGGCGGCCa -3'
miRNA:   3'- -CG-CGugC-GUUGcacGCGUCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 27874 0.77 0.06161
Target:  5'- aGCGCGCGCGaggACGUGCuGCGGcugcGCGGCgCg -3'
miRNA:   3'- -CGCGUGCGU---UGCACG-CGUC----CGCCGgG- -5'
26659 3' -60.5 NC_005808.1 + 8902 0.7 0.212132
Target:  5'- cGCGCugGCccGCGU-UGC-GGCuGGCCCg -3'
miRNA:   3'- -CGCGugCGu-UGCAcGCGuCCG-CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 37538 0.82 0.028365
Target:  5'- gGCGCcguugaACuGCAACGUgccGCGCAGGCGGCCg -3'
miRNA:   3'- -CGCG------UG-CGUUGCA---CGCGUCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 21406 0.71 0.186055
Target:  5'- uCGUugGCAACcuggGCGC-GGUGGCCg -3'
miRNA:   3'- cGCGugCGUUGca--CGCGuCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 9282 0.7 0.201343
Target:  5'- gGCGCGcCGCAgaACGUGCGCcGcGCcGCCg -3'
miRNA:   3'- -CGCGU-GCGU--UGCACGCGuC-CGcCGGg -5'
26659 3' -60.5 NC_005808.1 + 41578 0.72 0.162846
Target:  5'- gGCGCGCGUAcuucauguugGCG-GCgGUAGGCGGCa- -3'
miRNA:   3'- -CGCGUGCGU----------UGCaCG-CGUCCGCCGgg -5'
26659 3' -60.5 NC_005808.1 + 38620 0.72 0.142275
Target:  5'- -gGC-CGCGGCGaGCgGCAGGCcagcGGCCCa -3'
miRNA:   3'- cgCGuGCGUUGCaCG-CGUCCG----CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 28625 0.74 0.117462
Target:  5'- cGUGCGCGCcGCGaUG-GCcGGCGGCCg -3'
miRNA:   3'- -CGCGUGCGuUGC-ACgCGuCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 28332 0.77 0.069019
Target:  5'- aGCGCGCGguCAugGUGCGCAacauGGUGaGCCUg -3'
miRNA:   3'- -CGCGUGC--GUugCACGCGU----CCGC-CGGG- -5'
26659 3' -60.5 NC_005808.1 + 4190 0.68 0.266963
Target:  5'- uGCGCcgggaaGCAACGcugcaGCGCAGGCuGGCg- -3'
miRNA:   3'- -CGCGug----CGUUGCa----CGCGUCCG-CCGgg -5'
26659 3' -60.5 NC_005808.1 + 34481 0.69 0.260344
Target:  5'- gGCGCugGCGuccugcccguuCGUcaGCGaCAuGGCGGCCa -3'
miRNA:   3'- -CGCGugCGUu----------GCA--CGC-GU-CCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 7796 0.69 0.235203
Target:  5'- uGCGCAgGaauggcaAGCG-GUGCAGGCGGUg- -3'
miRNA:   3'- -CGCGUgCg------UUGCaCGCGUCCGCCGgg -5'
26659 3' -60.5 NC_005808.1 + 24464 0.7 0.223414
Target:  5'- uGCGCuucuucaacuuGCGCAGCGaguUGUGguGGCGaaugcgcgaaGCCCu -3'
miRNA:   3'- -CGCG-----------UGCGUUGC---ACGCguCCGC----------CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.