miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26662 5' -57.5 NC_005808.1 + 35037 0.66 0.539123
Target:  5'- aGCGcCGGACACgUGGCCuuGGC-CUUGc -3'
miRNA:   3'- -CGUaGCCUGUG-ACUGGggCUGcGGAU- -5'
26662 5' -57.5 NC_005808.1 + 17528 0.66 0.528433
Target:  5'- uGCAggcccuggCGuGGCAcCUGGCCUCGAUGCUg- -3'
miRNA:   3'- -CGUa-------GC-CUGU-GACUGGGGCUGCGGau -5'
26662 5' -57.5 NC_005808.1 + 22366 0.66 0.528433
Target:  5'- aGCAUCGuGCuGCccGACUUCGACGCCg- -3'
miRNA:   3'- -CGUAGCcUG-UGa-CUGGGGCUGCGGau -5'
26662 5' -57.5 NC_005808.1 + 16242 0.66 0.517823
Target:  5'- gGCGUCGGugA---ACUCCGACGCg-- -3'
miRNA:   3'- -CGUAGCCugUgacUGGGGCUGCGgau -5'
26662 5' -57.5 NC_005808.1 + 34126 0.66 0.517822
Target:  5'- cGCGUCGGcugcgGCAUcGcaggccACCUCGACGCCg- -3'
miRNA:   3'- -CGUAGCC-----UGUGaC------UGGGGCUGCGGau -5'
26662 5' -57.5 NC_005808.1 + 19319 0.66 0.507298
Target:  5'- aGCAUC-GACGCcgagaaguucaUGGgCCUGACGCCg- -3'
miRNA:   3'- -CGUAGcCUGUG-----------ACUgGGGCUGCGGau -5'
26662 5' -57.5 NC_005808.1 + 7433 0.66 0.507297
Target:  5'- gGCGccCGGACACUu-CCUCGACGCg-- -3'
miRNA:   3'- -CGUa-GCCUGUGAcuGGGGCUGCGgau -5'
26662 5' -57.5 NC_005808.1 + 20687 0.66 0.496865
Target:  5'- cGCAggCcGACACcGACCUgCGACGCCg- -3'
miRNA:   3'- -CGUa-GcCUGUGaCUGGG-GCUGCGGau -5'
26662 5' -57.5 NC_005808.1 + 23789 0.66 0.495827
Target:  5'- cGCGccacCGaGGCACUGGCCCgCGACcugggcgcuaccgGCCUGu -3'
miRNA:   3'- -CGUa---GC-CUGUGACUGGG-GCUG-------------CGGAU- -5'
26662 5' -57.5 NC_005808.1 + 13976 0.66 0.48653
Target:  5'- aCAUCGcccugaACUGgaacaACCCCGACGCCa- -3'
miRNA:   3'- cGUAGCcug---UGAC-----UGGGGCUGCGGau -5'
26662 5' -57.5 NC_005808.1 + 27435 0.66 0.486529
Target:  5'- cGCGcccggCGGcCGCaGGCCCUGGCGCUg- -3'
miRNA:   3'- -CGUa----GCCuGUGaCUGGGGCUGCGGau -5'
26662 5' -57.5 NC_005808.1 + 30156 0.67 0.476297
Target:  5'- cGCGUCGGACAUcagcGGCagUUGGCGCCa- -3'
miRNA:   3'- -CGUAGCCUGUGa---CUGg-GGCUGCGGau -5'
26662 5' -57.5 NC_005808.1 + 626 0.67 0.476297
Target:  5'- cGCcgUGGACAC-GGCgUCCGGCGUCg- -3'
miRNA:   3'- -CGuaGCCUGUGaCUG-GGGCUGCGGau -5'
26662 5' -57.5 NC_005808.1 + 7662 0.67 0.466173
Target:  5'- gGCAgaCGGACA--GACCCUGAC-CCUAc -3'
miRNA:   3'- -CGUa-GCCUGUgaCUGGGGCUGcGGAU- -5'
26662 5' -57.5 NC_005808.1 + 17353 0.67 0.456161
Target:  5'- gGCAUCGGACACcaucGCCUgCGACagguauGCCUGc -3'
miRNA:   3'- -CGUAGCCUGUGac--UGGG-GCUG------CGGAU- -5'
26662 5' -57.5 NC_005808.1 + 710 0.67 0.446267
Target:  5'- aGCcUUGGGCACcGA-CUCGACGCCg- -3'
miRNA:   3'- -CGuAGCCUGUGaCUgGGGCUGCGGau -5'
26662 5' -57.5 NC_005808.1 + 6603 0.68 0.40793
Target:  5'- gGCGauUCGGGCgACgacGACCCCGAaaaacuCGCCa- -3'
miRNA:   3'- -CGU--AGCCUG-UGa--CUGGGGCU------GCGGau -5'
26662 5' -57.5 NC_005808.1 + 236 0.68 0.398672
Target:  5'- gGCAUUGGcGCGCUGGguuuCCCCGGuggUGCCg- -3'
miRNA:   3'- -CGUAGCC-UGUGACU----GGGGCU---GCGGau -5'
26662 5' -57.5 NC_005808.1 + 32961 0.68 0.398672
Target:  5'- uGCGUCGauuacuGGCAa-GACCCgGACGCCa- -3'
miRNA:   3'- -CGUAGC------CUGUgaCUGGGgCUGCGGau -5'
26662 5' -57.5 NC_005808.1 + 29668 0.69 0.354456
Target:  5'- gGCGcUGGACaACUGGCaaaCCGcGCGCCUGg -3'
miRNA:   3'- -CGUaGCCUG-UGACUGg--GGC-UGCGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.