miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26663 3' -59.2 NC_005808.1 + 25709 0.66 0.475531
Target:  5'- gCCGGCagaacuGCCGAGGUgGAcGC-GCugCUg -3'
miRNA:   3'- -GGCUG------CGGCUCCAgCU-CGuCGugGAg -5'
26663 3' -59.2 NC_005808.1 + 15196 0.66 0.465603
Target:  5'- uCCGcCGCCagcauGGGGUCGGGCcugguaGGCAgCUa -3'
miRNA:   3'- -GGCuGCGG-----CUCCAGCUCG------UCGUgGAg -5'
26663 3' -59.2 NC_005808.1 + 10820 0.66 0.465603
Target:  5'- gCGG-GCCGAaGUCGAGC-GCGCCc- -3'
miRNA:   3'- gGCUgCGGCUcCAGCUCGuCGUGGag -5'
26663 3' -59.2 NC_005808.1 + 21633 0.66 0.465603
Target:  5'- -aGugGCCGAGcGgcaCGAGgaaaAGCugCUCa -3'
miRNA:   3'- ggCugCGGCUC-Ca--GCUCg---UCGugGAG- -5'
26663 3' -59.2 NC_005808.1 + 25287 0.66 0.465602
Target:  5'- gUCGaAUGCCuuGAGGUCGuGCGGCcgGCCc- -3'
miRNA:   3'- -GGC-UGCGG--CUCCAGCuCGUCG--UGGag -5'
26663 3' -59.2 NC_005808.1 + 16066 0.66 0.465602
Target:  5'- aCGugGCCGccG-CGcGCGGCGCCg- -3'
miRNA:   3'- gGCugCGGCucCaGCuCGUCGUGGag -5'
26663 3' -59.2 NC_005808.1 + 25099 0.66 0.465602
Target:  5'- cCCGGCGCCGuGGgauacAGCgGGUGCUUCu -3'
miRNA:   3'- -GGCUGCGGCuCCagc--UCG-UCGUGGAG- -5'
26663 3' -59.2 NC_005808.1 + 8021 0.66 0.455782
Target:  5'- gCG-CGCCGAGGccaCGGGCAaGCugucggaaauCCUCg -3'
miRNA:   3'- gGCuGCGGCUCCa--GCUCGU-CGu---------GGAG- -5'
26663 3' -59.2 NC_005808.1 + 38101 0.66 0.455782
Target:  5'- gCCGAaguCGCCGAGG-CGcugcucGguGCGCCa- -3'
miRNA:   3'- -GGCU---GCGGCUCCaGCu-----CguCGUGGag -5'
26663 3' -59.2 NC_005808.1 + 20617 0.66 0.446075
Target:  5'- gCGGCGUCGcAGGUCGGuGuCGGCcuGCgCUCg -3'
miRNA:   3'- gGCUGCGGC-UCCAGCU-C-GUCG--UG-GAG- -5'
26663 3' -59.2 NC_005808.1 + 30496 0.66 0.446075
Target:  5'- gCUGAaaguCGUCGAGGUUGAGCAcgagguggcGCAgCUUCu -3'
miRNA:   3'- -GGCU----GCGGCUCCAGCUCGU---------CGU-GGAG- -5'
26663 3' -59.2 NC_005808.1 + 9905 0.66 0.446075
Target:  5'- aUCGACGCCGAaacCGAGguGCAgCg- -3'
miRNA:   3'- -GGCUGCGGCUccaGCUCguCGUgGag -5'
26663 3' -59.2 NC_005808.1 + 12705 0.66 0.436484
Target:  5'- cCCGACGCCaaAGGaCG-GCAGCAgCg- -3'
miRNA:   3'- -GGCUGCGGc-UCCaGCuCGUCGUgGag -5'
26663 3' -59.2 NC_005808.1 + 11434 0.66 0.436484
Target:  5'- aCCGAggUGCCG-GG-CGAGCAGguCGCCa- -3'
miRNA:   3'- -GGCU--GCGGCuCCaGCUCGUC--GUGGag -5'
26663 3' -59.2 NC_005808.1 + 34682 0.66 0.436484
Target:  5'- -gGACGCCGAGcGcaaCGAGCAGCuggcgAUCUa -3'
miRNA:   3'- ggCUGCGGCUC-Ca--GCUCGUCG-----UGGAg -5'
26663 3' -59.2 NC_005808.1 + 10069 0.66 0.436484
Target:  5'- uCCGAggcguCGUCGGGG-CGAGCcguGCcauCCUCg -3'
miRNA:   3'- -GGCU-----GCGGCUCCaGCUCGu--CGu--GGAG- -5'
26663 3' -59.2 NC_005808.1 + 30206 0.66 0.435531
Target:  5'- uCCGACGCgGugcAGGcCG-GCGGCguguucuggcgcgGCCUCa -3'
miRNA:   3'- -GGCUGCGgC---UCCaGCuCGUCG-------------UGGAG- -5'
26663 3' -59.2 NC_005808.1 + 13902 0.66 0.430786
Target:  5'- aUGGCGUCGGGGUuguuccaguucagggCGAugucgcGCAGCGCCg- -3'
miRNA:   3'- gGCUGCGGCUCCA---------------GCU------CGUCGUGGag -5'
26663 3' -59.2 NC_005808.1 + 19366 0.66 0.427013
Target:  5'- uUGcCGuuGAGGUCGGcCAGgGCCUUg -3'
miRNA:   3'- gGCuGCggCUCCAGCUcGUCgUGGAG- -5'
26663 3' -59.2 NC_005808.1 + 14841 0.66 0.427013
Target:  5'- gUCGAUGCCGuuGG-CGGcCAGCGCCg- -3'
miRNA:   3'- -GGCUGCGGCu-CCaGCUcGUCGUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.