miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26665 3' -60.1 NC_005808.1 + 37311 0.66 0.410753
Target:  5'- ---cGCGCuGCGUGGccGCCugcaccGCGCCc -3'
miRNA:   3'- cuaaCGCG-CGCACCucCGGcu----CGCGG- -5'
26665 3' -60.1 NC_005808.1 + 38161 0.66 0.410753
Target:  5'- --aUGCGCGCGgcgccacAGGCgcuUGAGCGCa -3'
miRNA:   3'- cuaACGCGCGCacc----UCCG---GCUCGCGg -5'
26665 3' -60.1 NC_005808.1 + 38768 0.66 0.401601
Target:  5'- ---aGUGCGC-UGGAuuGGUCGcaacGGCGCCc -3'
miRNA:   3'- cuaaCGCGCGcACCU--CCGGC----UCGCGG- -5'
26665 3' -60.1 NC_005808.1 + 32470 0.66 0.401601
Target:  5'- --cUGC-CGagGUGGGggcGGCCGAuGCGCCc -3'
miRNA:   3'- cuaACGcGCg-CACCU---CCGGCU-CGCGG- -5'
26665 3' -60.1 NC_005808.1 + 12683 0.66 0.39258
Target:  5'- ---gGCGCGUGUcGAGGCC---CGCCu -3'
miRNA:   3'- cuaaCGCGCGCAcCUCCGGcucGCGG- -5'
26665 3' -60.1 NC_005808.1 + 27826 0.66 0.383692
Target:  5'- ---cGCGCGCugcccgcgGUGGc-GCCGGccGCGCCg -3'
miRNA:   3'- cuaaCGCGCG--------CACCucCGGCU--CGCGG- -5'
26665 3' -60.1 NC_005808.1 + 21986 0.66 0.383692
Target:  5'- gGAUUcGCGCaGCGUGcGGGUuuCGucGGCGCCu -3'
miRNA:   3'- -CUAA-CGCG-CGCACcUCCG--GC--UCGCGG- -5'
26665 3' -60.1 NC_005808.1 + 36027 0.66 0.374938
Target:  5'- --cUGCGCGCGgacacguacaGGuuGCCGGGgaaGCCg -3'
miRNA:   3'- cuaACGCGCGCa---------CCucCGGCUCg--CGG- -5'
26665 3' -60.1 NC_005808.1 + 39508 0.66 0.374938
Target:  5'- uGGUUGcCGCGUGUcgaagggcauGGGugcGGCuCGGGCGCUu -3'
miRNA:   3'- -CUAAC-GCGCGCA----------CCU---CCG-GCUCGCGG- -5'
26665 3' -60.1 NC_005808.1 + 15622 0.66 0.366321
Target:  5'- uGAcgGCGCcauugaccugGaCGUGGAGGCCG-GCaCCg -3'
miRNA:   3'- -CUaaCGCG----------C-GCACCUCCGGCuCGcGG- -5'
26665 3' -60.1 NC_005808.1 + 8271 0.67 0.349499
Target:  5'- ---aGCGCGacuacGAGGCCGuGCGCg -3'
miRNA:   3'- cuaaCGCGCgcac-CUCCGGCuCGCGg -5'
26665 3' -60.1 NC_005808.1 + 27667 0.67 0.349499
Target:  5'- --gUGgGCGCcaccuccaccGUGGucuuggaauacAGGCCGcGCGCCg -3'
miRNA:   3'- cuaACgCGCG----------CACC-----------UCCGGCuCGCGG- -5'
26665 3' -60.1 NC_005808.1 + 28623 0.67 0.328465
Target:  5'- ---cGgGCGCGgauGAGGCCGgccaguuccgcgcgcAGUGCCa -3'
miRNA:   3'- cuaaCgCGCGCac-CUCCGGC---------------UCGCGG- -5'
26665 3' -60.1 NC_005808.1 + 18841 0.68 0.309893
Target:  5'- -uUUGCGCGgcaUGUaGaAGGCCGGGCgGCCc -3'
miRNA:   3'- cuAACGCGC---GCAcC-UCCGGCUCG-CGG- -5'
26665 3' -60.1 NC_005808.1 + 26239 0.68 0.287818
Target:  5'- -uUUGCGCGCGUcGccgaAGGCaCGGGCacccGCCg -3'
miRNA:   3'- cuAACGCGCGCAcC----UCCG-GCUCG----CGG- -5'
26665 3' -60.1 NC_005808.1 + 35513 0.68 0.287103
Target:  5'- --cUGCG-GCcUGGAugaccagGGCCGGGCGCUu -3'
miRNA:   3'- cuaACGCgCGcACCU-------CCGGCUCGCGG- -5'
26665 3' -60.1 NC_005808.1 + 6274 0.69 0.253805
Target:  5'- --cUGCGCGC-UGGgcAGGCCGAacagGuCGCCc -3'
miRNA:   3'- cuaACGCGCGcACC--UCCGGCU----C-GCGG- -5'
26665 3' -60.1 NC_005808.1 + 11172 0.69 0.25316
Target:  5'- cGUUGCGUGCGcUGGucGGCCGuggugauGGUGCg -3'
miRNA:   3'- cUAACGCGCGC-ACCu-CCGGC-------UCGCGg -5'
26665 3' -60.1 NC_005808.1 + 27221 0.69 0.241153
Target:  5'- cGcgUGCgGCGCGUGGGGGacuuCGAGUGa- -3'
miRNA:   3'- -CuaACG-CGCGCACCUCCg---GCUCGCgg -5'
26665 3' -60.1 NC_005808.1 + 23294 0.7 0.229031
Target:  5'- ---gGCGCG-GUcGGuGGCCGAG-GCCg -3'
miRNA:   3'- cuaaCGCGCgCA-CCuCCGGCUCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.