miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26666 5' -55.8 NC_005808.1 + 40299 0.66 0.629288
Target:  5'- gGGCaaaCGGCAacgguUCGAGGCGCAcGgcaugGCGGu -3'
miRNA:   3'- -CCG---GCUGU-----AGCUCCGCGU-Caa---CGUCu -5'
26666 5' -55.8 NC_005808.1 + 39890 0.67 0.573628
Target:  5'- uGCCGACAccUCGAcguuGCGCAGgUGCGc- -3'
miRNA:   3'- cCGGCUGU--AGCUc---CGCGUCaACGUcu -5'
26666 5' -55.8 NC_005808.1 + 39331 0.69 0.436862
Target:  5'- gGGCCGACuAUCu-GGCGCGGaaGCuGAa -3'
miRNA:   3'- -CCGGCUG-UAGcuCCGCGUCaaCGuCU- -5'
26666 5' -55.8 NC_005808.1 + 37413 0.66 0.629288
Target:  5'- cGGCCGGCAggUCGGGGUcgGCAa-UGCGu- -3'
miRNA:   3'- -CCGGCUGU--AGCUCCG--CGUcaACGUcu -5'
26666 5' -55.8 NC_005808.1 + 37341 0.66 0.629288
Target:  5'- aGGCCGcgaGCA-CGuGGCGCAGcaugGCAu- -3'
miRNA:   3'- -CCGGC---UGUaGCuCCGCGUCaa--CGUcu -5'
26666 5' -55.8 NC_005808.1 + 36522 0.66 0.595806
Target:  5'- cGCuCGACGacuUCGAGGCGguGUgaugaGCAc- -3'
miRNA:   3'- cCG-GCUGU---AGCUCCGCguCAa----CGUcu -5'
26666 5' -55.8 NC_005808.1 + 35349 0.7 0.353912
Target:  5'- aGGCCggcGACAUCGGcccGCGCcaguggccgaAGUUGCAGGg -3'
miRNA:   3'- -CCGG---CUGUAGCUc--CGCG----------UCAACGUCU- -5'
26666 5' -55.8 NC_005808.1 + 34847 0.77 0.139968
Target:  5'- cGCUGAUaugGUCGAGGCGCGGcUGCAcGAu -3'
miRNA:   3'- cCGGCUG---UAGCUCCGCGUCaACGU-CU- -5'
26666 5' -55.8 NC_005808.1 + 32532 0.69 0.446752
Target:  5'- cGGCCGcccccaccucgGCAguagGGGGCGUAGggGCAGu -3'
miRNA:   3'- -CCGGC-----------UGUag--CUCCGCGUCaaCGUCu -5'
26666 5' -55.8 NC_005808.1 + 32203 0.67 0.515979
Target:  5'- cGGCCuugagggauucgggGGCGUCGAGGUcgGCAGcgGcCAGGg -3'
miRNA:   3'- -CCGG--------------CUGUAGCUCCG--CGUCaaC-GUCU- -5'
26666 5' -55.8 NC_005808.1 + 29263 0.68 0.50853
Target:  5'- aGGCCGGCcgguGUCGGGGUGgAcGUgGUAGGc -3'
miRNA:   3'- -CCGGCUG----UAGCUCCGCgU-CAaCGUCU- -5'
26666 5' -55.8 NC_005808.1 + 25617 0.68 0.477147
Target:  5'- cGCCGACAUCaucggcuacgGGGGCGCuGccgGCGGc -3'
miRNA:   3'- cCGGCUGUAG----------CUCCGCGuCaa-CGUCu -5'
26666 5' -55.8 NC_005808.1 + 24846 0.66 0.584696
Target:  5'- cGCgGGCAUCGAGGaCGacccGUgGCAGGu -3'
miRNA:   3'- cCGgCUGUAGCUCC-GCgu--CAaCGUCU- -5'
26666 5' -55.8 NC_005808.1 + 24802 0.66 0.584696
Target:  5'- gGGUCGagGCcgCGcAGGCGCGGUggaaGCGGc -3'
miRNA:   3'- -CCGGC--UGuaGC-UCCGCGUCAa---CGUCu -5'
26666 5' -55.8 NC_005808.1 + 24230 0.67 0.519185
Target:  5'- cGCCGAagcgcgcagcCGUCGAGGCGCuGggcCAGGc -3'
miRNA:   3'- cCGGCU----------GUAGCUCCGCGuCaacGUCU- -5'
26666 5' -55.8 NC_005808.1 + 23736 0.69 0.436862
Target:  5'- cGGcCCGACcgaggGUCGccuGGUGCAGUUGCu-- -3'
miRNA:   3'- -CC-GGCUG-----UAGCu--CCGCGUCAACGucu -5'
26666 5' -55.8 NC_005808.1 + 23560 0.78 0.111519
Target:  5'- cGGCCGACAUCGccggcAGGUGCGG--GCGGGg -3'
miRNA:   3'- -CCGGCUGUAGC-----UCCGCGUCaaCGUCU- -5'
26666 5' -55.8 NC_005808.1 + 23330 0.66 0.63376
Target:  5'- cGCCGACAccgaccugaccaugcUguuccccagCGAGGCGCGGUcGguGGc -3'
miRNA:   3'- cCGGCUGU---------------A---------GCUCCGCGUCAaCguCU- -5'
26666 5' -55.8 NC_005808.1 + 19996 0.68 0.50853
Target:  5'- cGGCCGACAaggaguUCGGcGGCGacaAGcUGCAaGAa -3'
miRNA:   3'- -CCGGCUGU------AGCU-CCGCg--UCaACGU-CU- -5'
26666 5' -55.8 NC_005808.1 + 19634 0.66 0.584696
Target:  5'- gGGCCgcGACAUCGGccaGCGUcgGGUUGguGGu -3'
miRNA:   3'- -CCGG--CUGUAGCUc--CGCG--UCAACguCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.