miRNA display CGI


Results 41 - 60 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26667 3' -59.7 NC_005808.1 + 34446 0.67 0.380361
Target:  5'- cGGCCaguucgUGCGCgGCCgUGCccuCGUCGGCg -3'
miRNA:   3'- -UCGG------AUGCGgCGG-AUGuu-GCGGCCGg -5'
26667 3' -59.7 NC_005808.1 + 41484 0.67 0.376859
Target:  5'- cAGCCguaucGCGCUGCCgugaauuucuACGCCGucGCCu -3'
miRNA:   3'- -UCGGa----UGCGGCGGaugu------UGCGGC--CGG- -5'
26667 3' -59.7 NC_005808.1 + 35558 0.67 0.371646
Target:  5'- aGGCCaUGCGCCuG-CUGCAACaGgCGGCa -3'
miRNA:   3'- -UCGG-AUGCGG-CgGAUGUUG-CgGCCGg -5'
26667 3' -59.7 NC_005808.1 + 40789 0.67 0.371646
Target:  5'- cAGCC--CGUgGCCg---GCGCUGGCCg -3'
miRNA:   3'- -UCGGauGCGgCGGauguUGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 26832 0.67 0.371646
Target:  5'- cAGgCUGCGCCGCCc-CGAUggaGCgGGCg -3'
miRNA:   3'- -UCgGAUGCGGCGGauGUUG---CGgCCGg -5'
26667 3' -59.7 NC_005808.1 + 29473 0.67 0.370783
Target:  5'- gGGCaacGCGCCcaagauucugcugGCCUACcGCGCCGaGUCc -3'
miRNA:   3'- -UCGga-UGCGG-------------CGGAUGuUGCGGC-CGG- -5'
26667 3' -59.7 NC_005808.1 + 10217 0.67 0.366484
Target:  5'- uGGCUgcUGaCCGCCUuccagaagaaaggagGCGugGCCGGUa -3'
miRNA:   3'- -UCGGauGC-GGCGGA---------------UGUugCGGCCGg -5'
26667 3' -59.7 NC_005808.1 + 32611 0.67 0.363069
Target:  5'- uGGCCcGCGUCaaggGCC-GCGACGCCgcGGUCg -3'
miRNA:   3'- -UCGGaUGCGG----CGGaUGUUGCGG--CCGG- -5'
26667 3' -59.7 NC_005808.1 + 24742 0.67 0.360523
Target:  5'- cGCCUGCGCgGCCUcgacccaugcugucGgAAUGaCCuGCCa -3'
miRNA:   3'- uCGGAUGCGgCGGA--------------UgUUGC-GGcCGG- -5'
26667 3' -59.7 NC_005808.1 + 5993 0.67 0.359677
Target:  5'- cGUCUGCGUCGCUcaaaauggcgacgACuuCGCCGGUg -3'
miRNA:   3'- uCGGAUGCGGCGGa------------UGuuGCGGCCGg -5'
26667 3' -59.7 NC_005808.1 + 12373 0.67 0.35463
Target:  5'- gAGCaacgaauucgACGCCGCCguagccgGC-ACGCUgGGCCa -3'
miRNA:   3'- -UCGga--------UGCGGCGGa------UGuUGCGG-CCGG- -5'
26667 3' -59.7 NC_005808.1 + 23003 0.67 0.35463
Target:  5'- cGCCUG-GUCgGCCUGCugcuGCGCCuGCUg -3'
miRNA:   3'- uCGGAUgCGG-CGGAUGu---UGCGGcCGG- -5'
26667 3' -59.7 NC_005808.1 + 25755 0.67 0.35463
Target:  5'- cGCUgggcGCGCUGCUgggcggcgGCAACGauGGCCg -3'
miRNA:   3'- uCGGa---UGCGGCGGa-------UGUUGCggCCGG- -5'
26667 3' -59.7 NC_005808.1 + 42499 0.67 0.346331
Target:  5'- uGCCcaaGCUGCCgcgcGCAgaAUGCCGGCg -3'
miRNA:   3'- uCGGaugCGGCGGa---UGU--UGCGGCCGg -5'
26667 3' -59.7 NC_005808.1 + 20611 0.67 0.346331
Target:  5'- cGCCaggcgGCGUCGCagguCggUGUCGGCCu -3'
miRNA:   3'- uCGGa----UGCGGCGgau-GuuGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 28023 0.67 0.346331
Target:  5'- aAGCCgaucaugucgGCGUCGCCgaagaAC-ACGUCGGCg -3'
miRNA:   3'- -UCGGa---------UGCGGCGGa----UGuUGCGGCCGg -5'
26667 3' -59.7 NC_005808.1 + 19114 0.67 0.346331
Target:  5'- cGCUgaucgACGCCGCCgGCGGcCGCUaccagGGCUa -3'
miRNA:   3'- uCGGa----UGCGGCGGaUGUU-GCGG-----CCGG- -5'
26667 3' -59.7 NC_005808.1 + 26205 0.67 0.346331
Target:  5'- gAGCCgcUGCGCCaaaucuGCCgcgACGaacacAUGCCGGCa -3'
miRNA:   3'- -UCGG--AUGCGG------CGGa--UGU-----UGCGGCCGg -5'
26667 3' -59.7 NC_005808.1 + 25800 0.67 0.346331
Target:  5'- cAGCgUGCuGCCGCCggugaggACGACGaCCccGCCg -3'
miRNA:   3'- -UCGgAUG-CGGCGGa------UGUUGC-GGc-CGG- -5'
26667 3' -59.7 NC_005808.1 + 25742 0.67 0.346331
Target:  5'- uGCCgaaaucCGCCGgCUgaugacguacAUGACGCCGGCa -3'
miRNA:   3'- uCGGau----GCGGCgGA----------UGUUGCGGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.