miRNA display CGI


Results 21 - 40 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26667 3' -59.7 NC_005808.1 + 10961 0.66 0.401825
Target:  5'- cGCCauuccgguggaggaaUACGCCGCgcGCAucGCGCCGaCCg -3'
miRNA:   3'- uCGG---------------AUGCGGCGgaUGU--UGCGGCcGG- -5'
26667 3' -59.7 NC_005808.1 + 36299 0.66 0.398194
Target:  5'- aGGCCgggGCGCUgGgUUACAccAgGUCGGCCg -3'
miRNA:   3'- -UCGGa--UGCGG-CgGAUGU--UgCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 3871 0.66 0.398194
Target:  5'- cGCCUGC-CCaaCUACAacgaauuccagGCGCUGGCUu -3'
miRNA:   3'- uCGGAUGcGGcgGAUGU-----------UGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 5633 0.66 0.398194
Target:  5'- cGGCCagcguugGCGCCGUCgauacCGugGCgGGCg -3'
miRNA:   3'- -UCGGa------UGCGGCGGau---GUugCGgCCGg -5'
26667 3' -59.7 NC_005808.1 + 10659 0.66 0.397289
Target:  5'- cGGCgUgaaacGCGCCGCCguguccaguUGCGucuugacggcagcGCGCaCGGCCu -3'
miRNA:   3'- -UCGgA-----UGCGGCGG---------AUGU-------------UGCG-GCCGG- -5'
26667 3' -59.7 NC_005808.1 + 27559 0.66 0.392788
Target:  5'- cGGCCgAgGCCGCCggcauccucgcguggUGCGugcgcggcGCGCUGGCa -3'
miRNA:   3'- -UCGGaUgCGGCGG---------------AUGU--------UGCGGCCGg -5'
26667 3' -59.7 NC_005808.1 + 34298 0.66 0.38921
Target:  5'- -uCCUGCGCCGCCgcgcuCGAaucuucgagaauCGCCGcCCa -3'
miRNA:   3'- ucGGAUGCGGCGGau---GUU------------GCGGCcGG- -5'
26667 3' -59.7 NC_005808.1 + 42393 0.66 0.388319
Target:  5'- -aCCUACGCCaCCaugaUGCugauggcggggauGACGCCGGCa -3'
miRNA:   3'- ucGGAUGCGGcGG----AUG-------------UUGCGGCCGg -5'
26667 3' -59.7 NC_005808.1 + 4354 0.66 0.388319
Target:  5'- uGGCCguUGCGuuGCCggUGCGcgugaagGCGaCGGCCg -3'
miRNA:   3'- -UCGG--AUGCggCGG--AUGU-------UGCgGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 12286 0.67 0.383884
Target:  5'- uGCCggugUGCUGCgUcccgaccaggggcagGCAGCGCgGGCCg -3'
miRNA:   3'- uCGGau--GCGGCGgA---------------UGUUGCGgCCGG- -5'
26667 3' -59.7 NC_005808.1 + 5298 0.67 0.380361
Target:  5'- cGGCC-ACGgCGUCgAUAuuuuccagguCGCCGGCCa -3'
miRNA:   3'- -UCGGaUGCgGCGGaUGUu---------GCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 5560 0.67 0.380361
Target:  5'- cGCCacgguaucgACGgCGCC---AACGCUGGCCg -3'
miRNA:   3'- uCGGa--------UGCgGCGGaugUUGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 25324 0.67 0.380361
Target:  5'- cGGCgCU-CGUCGCCgggAUuguccAgGCCGGCCa -3'
miRNA:   3'- -UCG-GAuGCGGCGGa--UGu----UgCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 37169 0.67 0.380361
Target:  5'- cGCCcACGCCGCCauccGCGCCGuggaGCg -3'
miRNA:   3'- uCGGaUGCGGCGGauguUGCGGC----CGg -5'
26667 3' -59.7 NC_005808.1 + 3884 0.67 0.380361
Target:  5'- aGGCC-GCGCUGCCgu---CGCC-GCCg -3'
miRNA:   3'- -UCGGaUGCGGCGGauguuGCGGcCGG- -5'
26667 3' -59.7 NC_005808.1 + 20308 0.67 0.380361
Target:  5'- uGCUcgGCgGCCGgUUGCGAUGCgGGCUg -3'
miRNA:   3'- uCGGa-UG-CGGCgGAUGUUGCGgCCGG- -5'
26667 3' -59.7 NC_005808.1 + 24497 0.67 0.380361
Target:  5'- aGGCCgcGCGCgGCaccgACAAaucggGCCGGCUg -3'
miRNA:   3'- -UCGGa-UGCGgCGga--UGUUg----CGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 34446 0.67 0.380361
Target:  5'- cGGCCaguucgUGCGCgGCCgUGCccuCGUCGGCg -3'
miRNA:   3'- -UCGG------AUGCGgCGG-AUGuu-GCGGCCGg -5'
26667 3' -59.7 NC_005808.1 + 32679 0.67 0.380361
Target:  5'- cGGCgU-CGCgGCCcuUGACGCgGGCCa -3'
miRNA:   3'- -UCGgAuGCGgCGGauGUUGCGgCCGG- -5'
26667 3' -59.7 NC_005808.1 + 19742 0.67 0.380361
Target:  5'- uGCUUGgGCUGgUUGCcguuguUGCCGGCCa -3'
miRNA:   3'- uCGGAUgCGGCgGAUGuu----GCGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.