miRNA display CGI


Results 21 - 40 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26667 3' -59.7 NC_005808.1 + 4630 0.75 0.103164
Target:  5'- uGGCCcGCGCUGCC-GCAGgGUCGGCa -3'
miRNA:   3'- -UCGGaUGCGGCGGaUGUUgCGGCCGg -5'
26667 3' -59.7 NC_005808.1 + 5175 0.75 0.105502
Target:  5'- uGCCUGCcaCCGCCUGCAcgucgucgauauUGCCGGCUa -3'
miRNA:   3'- uCGGAUGc-GGCGGAUGUu-----------GCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 593 0.75 0.106094
Target:  5'- gAGUUUGaugGCCGCCUGCGG-GUCGGCCa -3'
miRNA:   3'- -UCGGAUg--CGGCGGAUGUUgCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 6442 0.75 0.106095
Target:  5'- cGGCCUGCGCCugaUUGcCGACGUgGGCCg -3'
miRNA:   3'- -UCGGAUGCGGcg-GAU-GUUGCGgCCGG- -5'
26667 3' -59.7 NC_005808.1 + 3938 0.75 0.109103
Target:  5'- cGGCa-GCGCgGCCUACAGCGaCGGCg -3'
miRNA:   3'- -UCGgaUGCGgCGGAUGUUGCgGCCGg -5'
26667 3' -59.7 NC_005808.1 + 23942 0.75 0.109103
Target:  5'- uGGUCagGCGCCGCCcgGCGAgGUCGGCa -3'
miRNA:   3'- -UCGGa-UGCGGCGGa-UGUUgCGGCCGg -5'
26667 3' -59.7 NC_005808.1 + 37755 0.75 0.110328
Target:  5'- aAGCUg--GCCGCUUuccgugaauucgacgACGGCGCCGGCCc -3'
miRNA:   3'- -UCGGaugCGGCGGA---------------UGUUGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 16642 0.74 0.113449
Target:  5'- cGGCCUcguccggcGCGUCGCgCUACAACGUcuauaaggagcaaggCGGCCu -3'
miRNA:   3'- -UCGGA--------UGCGGCG-GAUGUUGCG---------------GCCGG- -5'
26667 3' -59.7 NC_005808.1 + 25395 0.74 0.114401
Target:  5'- cGGCCUggacaaucccggcgACGagCGCCggugGCAGgGCCGGCCg -3'
miRNA:   3'- -UCGGA--------------UGCg-GCGGa---UGUUgCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 8386 0.74 0.11536
Target:  5'- cGGCCUcGCGCUGgCUGCGuagccaGUCGGCCa -3'
miRNA:   3'- -UCGGA-UGCGGCgGAUGUug----CGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 20190 0.74 0.11536
Target:  5'- cGCCUuguCGUCGCCcucggucuugGCAGCGCCcgcGGCCg -3'
miRNA:   3'- uCGGAu--GCGGCGGa---------UGUUGCGG---CCGG- -5'
26667 3' -59.7 NC_005808.1 + 11497 0.74 0.11536
Target:  5'- cGCCUuauCGgCGaCCUGC-ACGCCGGCUc -3'
miRNA:   3'- uCGGAu--GCgGC-GGAUGuUGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 13462 0.74 0.11536
Target:  5'- cGCaacgAUGCCGCCUACAaccgcGCGCUGGgCa -3'
miRNA:   3'- uCGga--UGCGGCGGAUGU-----UGCGGCCgG- -5'
26667 3' -59.7 NC_005808.1 + 13281 0.74 0.116651
Target:  5'- aGGaCUACGUgGUCaagaacaugcaggcgUACAACGCCGGCCa -3'
miRNA:   3'- -UCgGAUGCGgCGG---------------AUGUUGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 34884 0.74 0.118613
Target:  5'- gAGCgUGCGCUGCaguucaucgGCAA-GCCGGCCg -3'
miRNA:   3'- -UCGgAUGCGGCGga-------UGUUgCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 20684 0.74 0.118613
Target:  5'- aGGCCgACaCCGaCCUGCGACGCC-GCCu -3'
miRNA:   3'- -UCGGaUGcGGC-GGAUGUUGCGGcCGG- -5'
26667 3' -59.7 NC_005808.1 + 730 0.74 0.121952
Target:  5'- gGGCg-GCuuUGCCgACAACGCCGGCCa -3'
miRNA:   3'- -UCGgaUGcgGCGGaUGUUGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 20804 0.74 0.125377
Target:  5'- cGCCUcuACGgCGCCaGCAGCauGUCGGCCu -3'
miRNA:   3'- uCGGA--UGCgGCGGaUGUUG--CGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 21179 0.74 0.125377
Target:  5'- cGGCCUgcuGCGCgGCCUGC--UGCUGGUCu -3'
miRNA:   3'- -UCGGA---UGCGgCGGAUGuuGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 14900 0.74 0.125377
Target:  5'- gGGUCUGCGCgGCgauCUGCuGCugGCCGGCCu -3'
miRNA:   3'- -UCGGAUGCGgCG---GAUGuUG--CGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.