miRNA display CGI


Results 21 - 40 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26667 3' -59.7 NC_005808.1 + 1082 0.66 0.425927
Target:  5'- uGGCCUuccagguguucgACGCUGCggugaaccACGGCaCCGGCCa -3'
miRNA:   3'- -UCGGA------------UGCGGCGga------UGUUGcGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 42393 0.66 0.388319
Target:  5'- -aCCUACGCCaCCaugaUGCugauggcggggauGACGCCGGCa -3'
miRNA:   3'- ucGGAUGCGGcGG----AUG-------------UUGCGGCCGg -5'
26667 3' -59.7 NC_005808.1 + 37597 0.66 0.425927
Target:  5'- aAGCggaCUGCGCCGaCCUGCuguuCGCCaacGUCa -3'
miRNA:   3'- -UCG---GAUGCGGC-GGAUGuu--GCGGc--CGG- -5'
26667 3' -59.7 NC_005808.1 + 4354 0.66 0.388319
Target:  5'- uGGCCguUGCGuuGCCggUGCGcgugaagGCGaCGGCCg -3'
miRNA:   3'- -UCGG--AUGCggCGG--AUGU-------UGCgGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 14819 0.66 0.407309
Target:  5'- cGGCg-GCGCUGCCUucgcccagguCGAUGCCguuggcGGCCa -3'
miRNA:   3'- -UCGgaUGCGGCGGAu---------GUUGCGG------CCGG- -5'
26667 3' -59.7 NC_005808.1 + 24218 0.66 0.40731
Target:  5'- cAGCCgucgagGCGCUggGCCagGCGcgcaGCCGGCUg -3'
miRNA:   3'- -UCGGa-----UGCGG--CGGa-UGUug--CGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 37513 0.66 0.425927
Target:  5'- gGGCCg--GCCGCCUGuucCAAcCGCaaaaccugccgCGGCCu -3'
miRNA:   3'- -UCGGaugCGGCGGAU---GUU-GCG-----------GCCGG- -5'
26667 3' -59.7 NC_005808.1 + 620 0.66 0.416554
Target:  5'- cAGCa-GCGCCGUggACAcgGCGuCCGGCg -3'
miRNA:   3'- -UCGgaUGCGGCGgaUGU--UGC-GGCCGg -5'
26667 3' -59.7 NC_005808.1 + 4867 0.66 0.425927
Target:  5'- cGGUCagguCGuuGCCcagcgcgGCGACGgCGGCCu -3'
miRNA:   3'- -UCGGau--GCggCGGa------UGUUGCgGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 23999 0.67 0.338172
Target:  5'- gGGCgUGCGCCugaccaucacGCCU---AUGCCGGCa -3'
miRNA:   3'- -UCGgAUGCGG----------CGGAuguUGCGGCCGg -5'
26667 3' -59.7 NC_005808.1 + 19742 0.67 0.380361
Target:  5'- uGCUUGgGCUGgUUGCcguuguUGCCGGCCa -3'
miRNA:   3'- uCGGAUgCGGCgGAUGuu----GCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 24622 0.67 0.338172
Target:  5'- cGGCCUcgccauCGCCGCgCUGCGcgaccACG-CGGUCa -3'
miRNA:   3'- -UCGGAu-----GCGGCG-GAUGU-----UGCgGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 12642 0.67 0.338172
Target:  5'- cGGCUauuucauCGCCGC--GCAGCGCgaGGCCg -3'
miRNA:   3'- -UCGGau-----GCGGCGgaUGUUGCGg-CCGG- -5'
26667 3' -59.7 NC_005808.1 + 24742 0.67 0.360523
Target:  5'- cGCCUGCGCgGCCUcgacccaugcugucGgAAUGaCCuGCCa -3'
miRNA:   3'- uCGGAUGCGgCGGA--------------UgUUGC-GGcCGG- -5'
26667 3' -59.7 NC_005808.1 + 25324 0.67 0.380361
Target:  5'- cGGCgCU-CGUCGCCgggAUuguccAgGCCGGCCa -3'
miRNA:   3'- -UCG-GAuGCGGCGGa--UGu----UgCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 5560 0.67 0.380361
Target:  5'- cGCCacgguaucgACGgCGCC---AACGCUGGCCg -3'
miRNA:   3'- uCGGa--------UGCgGCGGaugUUGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 3884 0.67 0.380361
Target:  5'- aGGCC-GCGCUGCCgu---CGCC-GCCg -3'
miRNA:   3'- -UCGGaUGCGGCGGauguuGCGGcCGG- -5'
26667 3' -59.7 NC_005808.1 + 20308 0.67 0.380361
Target:  5'- uGCUcgGCgGCCGgUUGCGAUGCgGGCUg -3'
miRNA:   3'- uCGGa-UG-CGGCgGAUGUUGCGgCCGG- -5'
26667 3' -59.7 NC_005808.1 + 12071 0.67 0.338172
Target:  5'- cGGCC-GCGCUGCUggcCGACGUggaaaaGGCCa -3'
miRNA:   3'- -UCGGaUGCGGCGGau-GUUGCGg-----CCGG- -5'
26667 3' -59.7 NC_005808.1 + 24486 0.67 0.380361
Target:  5'- uGGCCUGCGCCaggaaGUCguaGGgGCUGGCg -3'
miRNA:   3'- -UCGGAUGCGG-----CGGaugUUgCGGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.