miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26667 3' -59.7 NC_005808.1 + 28266 0.65 0.433514
Target:  5'- uGGCCgaccuggacaagGCGCCGCacCUGCuggGCGUgGGCa -3'
miRNA:   3'- -UCGGa-----------UGCGGCG--GAUGu--UGCGgCCGg -5'
26667 3' -59.7 NC_005808.1 + 27559 0.66 0.392788
Target:  5'- cGGCCgAgGCCGCCggcauccucgcguggUGCGugcgcggcGCGCUGGCa -3'
miRNA:   3'- -UCGGaUgCGGCGG---------------AUGU--------UGCGGCCGg -5'
26667 3' -59.7 NC_005808.1 + 3871 0.66 0.398194
Target:  5'- cGCCUGC-CCaaCUACAacgaauuccagGCGCUGGCUu -3'
miRNA:   3'- uCGGAUGcGGcgGAUGU-----------UGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 620 0.66 0.416554
Target:  5'- cAGCa-GCGCCGUggACAcgGCGuCCGGCg -3'
miRNA:   3'- -UCGgaUGCGGCGgaUGU--UGC-GGCCGg -5'
26667 3' -59.7 NC_005808.1 + 5633 0.66 0.398194
Target:  5'- cGGCCagcguugGCGCCGUCgauacCGugGCgGGCg -3'
miRNA:   3'- -UCGGa------UGCGGCGGau---GUugCGgCCGg -5'
26667 3' -59.7 NC_005808.1 + 37513 0.66 0.425927
Target:  5'- gGGCCg--GCCGCCUGuucCAAcCGCaaaaccugccgCGGCCu -3'
miRNA:   3'- -UCGGaugCGGCGGAU---GUU-GCG-----------GCCGG- -5'
26667 3' -59.7 NC_005808.1 + 37597 0.66 0.425927
Target:  5'- aAGCggaCUGCGCCGaCCUGCuguuCGCCaacGUCa -3'
miRNA:   3'- -UCG---GAUGCGGC-GGAUGuu--GCGGc--CGG- -5'
26667 3' -59.7 NC_005808.1 + 36299 0.66 0.398194
Target:  5'- aGGCCgggGCGCUgGgUUACAccAgGUCGGCCg -3'
miRNA:   3'- -UCGGa--UGCGG-CgGAUGU--UgCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 14819 0.66 0.407309
Target:  5'- cGGCg-GCGCUGCCUucgcccagguCGAUGCCguuggcGGCCa -3'
miRNA:   3'- -UCGgaUGCGGCGGAu---------GUUGCGG------CCGG- -5'
26667 3' -59.7 NC_005808.1 + 23773 0.66 0.420288
Target:  5'- gGGCCgaUGCGCCGCggCUACGAagauggauuccguggUGCCgaucaacuGGCCu -3'
miRNA:   3'- -UCGG--AUGCGGCG--GAUGUU---------------GCGG--------CCGG- -5'
26667 3' -59.7 NC_005808.1 + 32456 0.66 0.407309
Target:  5'- -cCCUACGCCcCCUACugccgagguGGgGgCGGCCg -3'
miRNA:   3'- ucGGAUGCGGcGGAUG---------UUgCgGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 34298 0.66 0.38921
Target:  5'- -uCCUGCGCCGCCgcgcuCGAaucuucgagaauCGCCGcCCa -3'
miRNA:   3'- ucGGAUGCGGCGGau---GUU------------GCGGCcGG- -5'
26667 3' -59.7 NC_005808.1 + 27506 0.66 0.416554
Target:  5'- cGGCCUcgGCCGCCagcuucuCGGCG-CGGUCg -3'
miRNA:   3'- -UCGGAugCGGCGGau-----GUUGCgGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 42393 0.66 0.388319
Target:  5'- -aCCUACGCCaCCaugaUGCugauggcggggauGACGCCGGCa -3'
miRNA:   3'- ucGGAUGCGGcGG----AUG-------------UUGCGGCCGg -5'
26667 3' -59.7 NC_005808.1 + 4867 0.66 0.425927
Target:  5'- cGGUCagguCGuuGCCcagcgcgGCGACGgCGGCCu -3'
miRNA:   3'- -UCGGau--GCggCGGa------UGUUGCgGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 13134 0.66 0.424984
Target:  5'- aGGCgUGgGUcguucugcaacugCGCCU-CGAUGUCGGCCa -3'
miRNA:   3'- -UCGgAUgCG-------------GCGGAuGUUGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 10961 0.66 0.401825
Target:  5'- cGCCauuccgguggaggaaUACGCCGCgcGCAucGCGCCGaCCg -3'
miRNA:   3'- uCGG---------------AUGCGGCGgaUGU--UGCGGCcGG- -5'
26667 3' -59.7 NC_005808.1 + 10659 0.66 0.397289
Target:  5'- cGGCgUgaaacGCGCCGCCguguccaguUGCGucuugacggcagcGCGCaCGGCCu -3'
miRNA:   3'- -UCGgA-----UGCGGCGG---------AUGU-------------UGCG-GCCGG- -5'
26667 3' -59.7 NC_005808.1 + 22236 0.66 0.414695
Target:  5'- cGGCCcugguugucgGCCGCgaugGCGuauuCGCCGGCCg -3'
miRNA:   3'- -UCGGaug-------CGGCGga--UGUu---GCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 8419 0.66 0.416554
Target:  5'- gGGCCgUGCGCuUGUCUACGGCcuugagGCUuuGGCCc -3'
miRNA:   3'- -UCGG-AUGCG-GCGGAUGUUG------CGG--CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.