miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26667 3' -59.7 NC_005808.1 + 21179 0.74 0.125377
Target:  5'- cGGCCUgcuGCGCgGCCUGC--UGCUGGUCu -3'
miRNA:   3'- -UCGGA---UGCGgCGGAUGuuGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 593 0.75 0.106094
Target:  5'- gAGUUUGaugGCCGCCUGCGG-GUCGGCCa -3'
miRNA:   3'- -UCGGAUg--CGGCGGAUGUUgCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 23942 0.75 0.109103
Target:  5'- uGGUCagGCGCCGCCcgGCGAgGUCGGCa -3'
miRNA:   3'- -UCGGa-UGCGGCGGa-UGUUgCGGCCGg -5'
26667 3' -59.7 NC_005808.1 + 37755 0.75 0.110328
Target:  5'- aAGCUg--GCCGCUUuccgugaauucgacgACGGCGCCGGCCc -3'
miRNA:   3'- -UCGGaugCGGCGGA---------------UGUUGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 8386 0.74 0.11536
Target:  5'- cGGCCUcGCGCUGgCUGCGuagccaGUCGGCCa -3'
miRNA:   3'- -UCGGA-UGCGGCgGAUGUug----CGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 20190 0.74 0.11536
Target:  5'- cGCCUuguCGUCGCCcucggucuugGCAGCGCCcgcGGCCg -3'
miRNA:   3'- uCGGAu--GCGGCGGa---------UGUUGCGG---CCGG- -5'
26667 3' -59.7 NC_005808.1 + 34884 0.74 0.118613
Target:  5'- gAGCgUGCGCUGCaguucaucgGCAA-GCCGGCCg -3'
miRNA:   3'- -UCGgAUGCGGCGga-------UGUUgCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 730 0.74 0.121952
Target:  5'- gGGCg-GCuuUGCCgACAACGCCGGCCa -3'
miRNA:   3'- -UCGgaUGcgGCGGaUGUUGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 14900 0.74 0.125377
Target:  5'- gGGUCUGCGCgGCgauCUGCuGCugGCCGGCCu -3'
miRNA:   3'- -UCGGAUGCGgCG---GAUGuUG--CGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 5175 0.75 0.105502
Target:  5'- uGCCUGCcaCCGCCUGCAcgucgucgauauUGCCGGCUa -3'
miRNA:   3'- uCGGAUGc-GGCGGAUGUu-----------GCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 4630 0.75 0.103164
Target:  5'- uGGCCcGCGCUGCC-GCAGgGUCGGCa -3'
miRNA:   3'- -UCGGaUGCGGCGGaUGUUgCGGCCGg -5'
26667 3' -59.7 NC_005808.1 + 11263 0.75 0.100311
Target:  5'- gGGUUUGCGCUGCggcgCUGgGACGCuCGGCCa -3'
miRNA:   3'- -UCGGAUGCGGCG----GAUgUUGCG-GCCGG- -5'
26667 3' -59.7 NC_005808.1 + 11146 0.82 0.032758
Target:  5'- cGGCCUGCugcuggGCCGCCUGCGcacguugcguGCGCUGGUCg -3'
miRNA:   3'- -UCGGAUG------CGGCGGAUGU----------UGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 34844 0.79 0.052088
Target:  5'- gAGCCUGgauuccuuCGUCGCCaACAGCaaGCCGGCCg -3'
miRNA:   3'- -UCGGAU--------GCGGCGGaUGUUG--CGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 27824 0.78 0.063696
Target:  5'- cGCgcGCGCUGCCcGCGgugGCGCCGGCCg -3'
miRNA:   3'- uCGgaUGCGGCGGaUGU---UGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 7223 0.77 0.067449
Target:  5'- cAGCauCUGCGCCGCgCUcacccucgGCGAUGUCGGCCg -3'
miRNA:   3'- -UCG--GAUGCGGCG-GA--------UGUUGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 23417 0.77 0.067449
Target:  5'- gAGC--GCGCCGgUcagUGCGACGCCGGCCg -3'
miRNA:   3'- -UCGgaUGCGGCgG---AUGUUGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 18461 0.77 0.077784
Target:  5'- cGGUC-GCGgCGCCgGCGGCGUCGGCCg -3'
miRNA:   3'- -UCGGaUGCgGCGGaUGUUGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 41494 0.76 0.082329
Target:  5'- aAGCCUuuGCCGCCUAC--CGCC-GCCa -3'
miRNA:   3'- -UCGGAugCGGCGGAUGuuGCGGcCGG- -5'
26667 3' -59.7 NC_005808.1 + 11578 0.76 0.089624
Target:  5'- aAGCC-AUGCCGCCcAgGGcCGCCGGCUg -3'
miRNA:   3'- -UCGGaUGCGGCGGaUgUU-GCGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.