miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26667 3' -59.7 NC_005808.1 + 13380 1.1 0.000217
Target:  5'- aAGCCUACGCCGCCUACAACGCCGGCCc -3'
miRNA:   3'- -UCGGAUGCGGCGGAUGUUGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 20684 0.74 0.118613
Target:  5'- aGGCCgACaCCGaCCUGCGACGCC-GCCu -3'
miRNA:   3'- -UCGGaUGcGGC-GGAUGUUGCGGcCGG- -5'
26667 3' -59.7 NC_005808.1 + 29114 0.74 0.125377
Target:  5'- uGGCCUACgaGCCGCCgguggguauCGAC-CUGGCCg -3'
miRNA:   3'- -UCGGAUG--CGGCGGau-------GUUGcGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 28266 0.65 0.433514
Target:  5'- uGGCCgaccuggacaagGCGCCGCacCUGCuggGCGUgGGCa -3'
miRNA:   3'- -UCGGa-----------UGCGGCG--GAUGu--UGCGgCCGg -5'
26667 3' -59.7 NC_005808.1 + 2298 0.77 0.071414
Target:  5'- cGGCCacGCGCCGCCUGCuGCGCgUGGUg -3'
miRNA:   3'- -UCGGa-UGCGGCGGAUGuUGCG-GCCGg -5'
26667 3' -59.7 NC_005808.1 + 17366 0.77 0.071414
Target:  5'- uGCCggaauggAUGCgCGCCcGCGGCGCCGGCUu -3'
miRNA:   3'- uCGGa------UGCG-GCGGaUGUUGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 27318 0.75 0.094825
Target:  5'- uGCCUcgGCCaagaGCCUGgGGCGCCGGCUg -3'
miRNA:   3'- uCGGAugCGG----CGGAUgUUGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 8204 0.75 0.097531
Target:  5'- cGCCgacaccCGCaCGCCcACAaccaACGCCGGCCg -3'
miRNA:   3'- uCGGau----GCG-GCGGaUGU----UGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 3938 0.75 0.109103
Target:  5'- cGGCa-GCGCgGCCUACAGCGaCGGCg -3'
miRNA:   3'- -UCGgaUGCGgCGGAUGUUGCgGCCGg -5'
26667 3' -59.7 NC_005808.1 + 13281 0.74 0.116651
Target:  5'- aGGaCUACGUgGUCaagaacaugcaggcgUACAACGCCGGCCa -3'
miRNA:   3'- -UCgGAUGCGgCGG---------------AUGUUGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 25395 0.74 0.114401
Target:  5'- cGGCCUggacaaucccggcgACGagCGCCggugGCAGgGCCGGCCg -3'
miRNA:   3'- -UCGGA--------------UGCg-GCGGa---UGUUgCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 6442 0.75 0.106095
Target:  5'- cGGCCUGCGCCugaUUGcCGACGUgGGCCg -3'
miRNA:   3'- -UCGGAUGCGGcg-GAU-GUUGCGgCCGG- -5'
26667 3' -59.7 NC_005808.1 + 8643 0.79 0.052088
Target:  5'- aGGCCgcacGCGCgGCCUACGACGCCcaggaugaGGUCg -3'
miRNA:   3'- -UCGGa---UGCGgCGGAUGUUGCGG--------CCGG- -5'
26667 3' -59.7 NC_005808.1 + 13462 0.74 0.11536
Target:  5'- cGCaacgAUGCCGCCUACAaccgcGCGCUGGgCa -3'
miRNA:   3'- uCGga--UGCGGCGGAUGU-----UGCGGCCgG- -5'
26667 3' -59.7 NC_005808.1 + 27498 0.78 0.060146
Target:  5'- gGGCCUGCgGCCGCCggGCGcgguGCGCCaGGCg -3'
miRNA:   3'- -UCGGAUG-CGGCGGa-UGU----UGCGG-CCGg -5'
26667 3' -59.7 NC_005808.1 + 2086 0.75 0.103164
Target:  5'- cGCCUGCGCgacuuCGCCaGCgAGCGCCugGGCCu -3'
miRNA:   3'- uCGGAUGCG-----GCGGaUG-UUGCGG--CCGG- -5'
26667 3' -59.7 NC_005808.1 + 11497 0.74 0.11536
Target:  5'- cGCCUuauCGgCGaCCUGC-ACGCCGGCUc -3'
miRNA:   3'- uCGGAu--GCgGC-GGAUGuUGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 20804 0.74 0.125377
Target:  5'- cGCCUcuACGgCGCCaGCAGCauGUCGGCCu -3'
miRNA:   3'- uCGGA--UGCgGCGGaUGUUG--CGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 14937 0.78 0.061191
Target:  5'- aAGCCgggcaacuuaaagGCGCCcaGCgUGCGGCGCUGGCCg -3'
miRNA:   3'- -UCGGa------------UGCGG--CGgAUGUUGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 27654 0.77 0.071414
Target:  5'- cGCCaucugGCGCCGCCUGC--UGCCGGUg -3'
miRNA:   3'- uCGGa----UGCGGCGGAUGuuGCGGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.