miRNA display CGI


Results 1 - 20 of 262 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26667 3' -59.7 NC_005808.1 + 416 0.66 0.40731
Target:  5'- gGGCCUgGCGgaCgGCCUgcugcGCGACGCCaccGCCa -3'
miRNA:   3'- -UCGGA-UGC--GgCGGA-----UGUUGCGGc--CGG- -5'
26667 3' -59.7 NC_005808.1 + 571 0.7 0.21511
Target:  5'- cGCCUGCaaGCCGCC-GCGGCGCaguaugcuGCCg -3'
miRNA:   3'- uCGGAUG--CGGCGGaUGUUGCGgc------CGG- -5'
26667 3' -59.7 NC_005808.1 + 593 0.75 0.106094
Target:  5'- gAGUUUGaugGCCGCCUGCGG-GUCGGCCa -3'
miRNA:   3'- -UCGGAUg--CGGCGGAUGUUgCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 620 0.66 0.416554
Target:  5'- cAGCa-GCGCCGUggACAcgGCGuCCGGCg -3'
miRNA:   3'- -UCGgaUGCGGCGgaUGU--UGC-GGCCGg -5'
26667 3' -59.7 NC_005808.1 + 670 0.87 0.012457
Target:  5'- uAGCCaccAgGCCGCCUACGgcgGCGCCGGCCg -3'
miRNA:   3'- -UCGGa--UgCGGCGGAUGU---UGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 690 0.73 0.143877
Target:  5'- cGCCggACGCCGUgUccACGGCGCUgcuGGCCg -3'
miRNA:   3'- uCGGa-UGCGGCGgA--UGUUGCGG---CCGG- -5'
26667 3' -59.7 NC_005808.1 + 730 0.74 0.121952
Target:  5'- gGGCg-GCuuUGCCgACAACGCCGGCCa -3'
miRNA:   3'- -UCGgaUGcgGCGGaUGUUGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 744 0.74 0.125377
Target:  5'- cGGCCgGCGCCGCCguagGCGGC-CUGGUg -3'
miRNA:   3'- -UCGGaUGCGGCGGa---UGUUGcGGCCGg -5'
26667 3' -59.7 NC_005808.1 + 813 0.71 0.188505
Target:  5'- cGCC-GCGCCcaGCCcuUGCcgAACGUCGGCCa -3'
miRNA:   3'- uCGGaUGCGG--CGG--AUG--UUGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 980 0.69 0.264319
Target:  5'- cAGCCacUugGCCGCCUgGCggUGCCguGGUUc -3'
miRNA:   3'- -UCGG--AugCGGCGGA-UGuuGCGG--CCGG- -5'
26667 3' -59.7 NC_005808.1 + 1082 0.66 0.425927
Target:  5'- uGGCCUuccagguguucgACGCUGCggugaaccACGGCaCCGGCCa -3'
miRNA:   3'- -UCGGA------------UGCGGCGga------UGUUGcGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 1096 0.69 0.285002
Target:  5'- uGCCUugGCCGUgUcgcgcgGCAugucGCGCauCGGCCc -3'
miRNA:   3'- uCGGAugCGGCGgA------UGU----UGCG--GCCGG- -5'
26667 3' -59.7 NC_005808.1 + 1115 0.69 0.277969
Target:  5'- cGCCgguuCGCgGCgacaUGCugcCGCCGGCCg -3'
miRNA:   3'- uCGGau--GCGgCGg---AUGuu-GCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 1179 0.7 0.232574
Target:  5'- uAGUCU-CGCCGCCg---GgGUCGGCCg -3'
miRNA:   3'- -UCGGAuGCGGCGGauguUgCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 1533 0.72 0.167984
Target:  5'- cGGCCUGCcaggagGCCGCCgACcGCGCCGucaagaagguguuuGCCa -3'
miRNA:   3'- -UCGGAUG------CGGCGGaUGuUGCGGC--------------CGG- -5'
26667 3' -59.7 NC_005808.1 + 1787 0.68 0.306943
Target:  5'- aGGaCUUggACGCCcucGCCgGC-ACGCCGGCCc -3'
miRNA:   3'- -UC-GGA--UGCGG---CGGaUGuUGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 2086 0.75 0.103164
Target:  5'- cGCCUGCGCgacuuCGCCaGCgAGCGCCugGGCCu -3'
miRNA:   3'- uCGGAUGCG-----GCGGaUG-UUGCGG--CCGG- -5'
26667 3' -59.7 NC_005808.1 + 2141 0.72 0.164839
Target:  5'- cAGCCggucaaccGCGCCGCCgUAC-ACGuuGGCg -3'
miRNA:   3'- -UCGGa-------UGCGGCGG-AUGuUGCggCCGg -5'
26667 3' -59.7 NC_005808.1 + 2298 0.77 0.071414
Target:  5'- cGGCCacGCGCCGCCUGCuGCGCgUGGUg -3'
miRNA:   3'- -UCGGa-UGCGGCGGAUGuUGCG-GCCGg -5'
26667 3' -59.7 NC_005808.1 + 2519 0.74 0.127828
Target:  5'- cGCCUugugcaacaucgugGCGCCGaUCUuCGAgGCCGGCCu -3'
miRNA:   3'- uCGGA--------------UGCGGC-GGAuGUUgCGGCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.