miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26667 3' -59.7 NC_005808.1 + 42499 0.67 0.346331
Target:  5'- uGCCcaaGCUGCCgcgcGCAgaAUGCCGGCg -3'
miRNA:   3'- uCGGaugCGGCGGa---UGU--UGCGGCCGg -5'
26667 3' -59.7 NC_005808.1 + 42393 0.66 0.388319
Target:  5'- -aCCUACGCCaCCaugaUGCugauggcggggauGACGCCGGCa -3'
miRNA:   3'- ucGGAUGCGGcGG----AUG-------------UUGCGGCCGg -5'
26667 3' -59.7 NC_005808.1 + 42314 0.67 0.338171
Target:  5'- cGCCUucCGgCGCagCUACugGACGCCGuGCCu -3'
miRNA:   3'- uCGGAu-GCgGCG--GAUG--UUGCGGC-CGG- -5'
26667 3' -59.7 NC_005808.1 + 41494 0.76 0.082329
Target:  5'- aAGCCUuuGCCGCCUAC--CGCC-GCCa -3'
miRNA:   3'- -UCGGAugCGGCGGAUGuuGCGGcCGG- -5'
26667 3' -59.7 NC_005808.1 + 41484 0.67 0.376859
Target:  5'- cAGCCguaucGCGCUGCCgugaauuucuACGCCGucGCCu -3'
miRNA:   3'- -UCGGa----UGCGGCGGaugu------UGCGGC--CGG- -5'
26667 3' -59.7 NC_005808.1 + 40898 0.68 0.306943
Target:  5'- cGGCCUGCGCCug--GC-GCGUCgGGCCg -3'
miRNA:   3'- -UCGGAUGCGGcggaUGuUGCGG-CCGG- -5'
26667 3' -59.7 NC_005808.1 + 40832 0.71 0.209543
Target:  5'- cGGCCcgACG-CGCCagGCGcAgGCCGGCCa -3'
miRNA:   3'- -UCGGa-UGCgGCGGa-UGU-UgCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 40789 0.67 0.371646
Target:  5'- cAGCC--CGUgGCCg---GCGCUGGCCg -3'
miRNA:   3'- -UCGGauGCGgCGGauguUGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 40711 0.72 0.169349
Target:  5'- uGCUguuCGCCcacCCggcCAGCGCCGGCCa -3'
miRNA:   3'- uCGGau-GCGGc--GGau-GUUGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 40616 0.68 0.292175
Target:  5'- cGaCCU-CGCgCGCCUACAGCguGCCuucccccagGGCCg -3'
miRNA:   3'- uC-GGAuGCG-GCGGAUGUUG--CGG---------CCGG- -5'
26667 3' -59.7 NC_005808.1 + 39851 0.71 0.204101
Target:  5'- uGGUCggcACGCC-CgaGCAGCGCCgGGCCg -3'
miRNA:   3'- -UCGGa--UGCGGcGgaUGUUGCGG-CCGG- -5'
26667 3' -59.7 NC_005808.1 + 39764 0.69 0.271075
Target:  5'- uGCUgGCGCCGCUgcGCGugGCCgcgagcaccuGGCCc -3'
miRNA:   3'- uCGGaUGCGGCGGa-UGUugCGG----------CCGG- -5'
26667 3' -59.7 NC_005808.1 + 39398 0.66 0.410992
Target:  5'- cAGCUUccGCGCCagauagucggcccguGCCUuuGCGAUGCCGGa- -3'
miRNA:   3'- -UCGGA--UGCGG---------------CGGA--UGUUGCGGCCgg -5'
26667 3' -59.7 NC_005808.1 + 38889 0.68 0.330152
Target:  5'- gAGCggaUGCGCCGCaugggGCAGCGCgucGCCg -3'
miRNA:   3'- -UCGg--AUGCGGCGga---UGUUGCGgc-CGG- -5'
26667 3' -59.7 NC_005808.1 + 38557 0.7 0.238656
Target:  5'- uGGCCUGcCGCuCGCC-GCG--GCCGGCUu -3'
miRNA:   3'- -UCGGAU-GCG-GCGGaUGUugCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 38504 0.69 0.285002
Target:  5'- -uUCaGCGCCGCCcACcugGCCGGCCu -3'
miRNA:   3'- ucGGaUGCGGCGGaUGuugCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 38487 0.69 0.271075
Target:  5'- uAGCCg--GCCGCCUcgaugGCGggcAUGuuGGCCg -3'
miRNA:   3'- -UCGGaugCGGCGGA-----UGU---UGCggCCGG- -5'
26667 3' -59.7 NC_005808.1 + 38278 0.72 0.173968
Target:  5'- cAGCCagGCGCCGUC----GCGCCgGGCCu -3'
miRNA:   3'- -UCGGa-UGCGGCGGauguUGCGG-CCGG- -5'
26667 3' -59.7 NC_005808.1 + 38227 0.72 0.173968
Target:  5'- cGCCUggcuGCGCaucCGCCUGC--CGuCCGGCCg -3'
miRNA:   3'- uCGGA----UGCG---GCGGAUGuuGC-GGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 38093 0.69 0.251218
Target:  5'- cGCCgagGCGCUGCUcGguGCGCCaGGCg -3'
miRNA:   3'- uCGGa--UGCGGCGGaUguUGCGG-CCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.