Results 1 - 20 of 262 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26667 | 3' | -59.7 | NC_005808.1 | + | 13380 | 1.1 | 0.000217 |
Target: 5'- aAGCCUACGCCGCCUACAACGCCGGCCc -3' miRNA: 3'- -UCGGAUGCGGCGGAUGUUGCGGCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 670 | 0.87 | 0.012457 |
Target: 5'- uAGCCaccAgGCCGCCUACGgcgGCGCCGGCCg -3' miRNA: 3'- -UCGGa--UgCGGCGGAUGU---UGCGGCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 11146 | 0.82 | 0.032758 |
Target: 5'- cGGCCUGCugcuggGCCGCCUGCGcacguugcguGCGCUGGUCg -3' miRNA: 3'- -UCGGAUG------CGGCGGAUGU----------UGCGGCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 8643 | 0.79 | 0.052088 |
Target: 5'- aGGCCgcacGCGCgGCCUACGACGCCcaggaugaGGUCg -3' miRNA: 3'- -UCGGa---UGCGgCGGAUGUUGCGG--------CCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 34844 | 0.79 | 0.052088 |
Target: 5'- gAGCCUGgauuccuuCGUCGCCaACAGCaaGCCGGCCg -3' miRNA: 3'- -UCGGAU--------GCGGCGGaUGUUG--CGGCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 27498 | 0.78 | 0.060146 |
Target: 5'- gGGCCUGCgGCCGCCggGCGcgguGCGCCaGGCg -3' miRNA: 3'- -UCGGAUG-CGGCGGa-UGU----UGCGG-CCGg -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 14937 | 0.78 | 0.061191 |
Target: 5'- aAGCCgggcaacuuaaagGCGCCcaGCgUGCGGCGCUGGCCg -3' miRNA: 3'- -UCGGa------------UGCGG--CGgAUGUUGCGGCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 27824 | 0.78 | 0.063696 |
Target: 5'- cGCgcGCGCUGCCcGCGgugGCGCCGGCCg -3' miRNA: 3'- uCGgaUGCGGCGGaUGU---UGCGGCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 7223 | 0.77 | 0.067449 |
Target: 5'- cAGCauCUGCGCCGCgCUcacccucgGCGAUGUCGGCCg -3' miRNA: 3'- -UCG--GAUGCGGCG-GA--------UGUUGCGGCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 23417 | 0.77 | 0.067449 |
Target: 5'- gAGC--GCGCCGgUcagUGCGACGCCGGCCg -3' miRNA: 3'- -UCGgaUGCGGCgG---AUGUUGCGGCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 27654 | 0.77 | 0.071414 |
Target: 5'- cGCCaucugGCGCCGCCUGC--UGCCGGUg -3' miRNA: 3'- uCGGa----UGCGGCGGAUGuuGCGGCCGg -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 2298 | 0.77 | 0.071414 |
Target: 5'- cGGCCacGCGCCGCCUGCuGCGCgUGGUg -3' miRNA: 3'- -UCGGa-UGCGGCGGAUGuUGCG-GCCGg -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 17366 | 0.77 | 0.071414 |
Target: 5'- uGCCggaauggAUGCgCGCCcGCGGCGCCGGCUu -3' miRNA: 3'- uCGGa------UGCG-GCGGaUGUUGCGGCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 18461 | 0.77 | 0.077784 |
Target: 5'- cGGUC-GCGgCGCCgGCGGCGUCGGCCg -3' miRNA: 3'- -UCGGaUGCgGCGGaUGUUGCGGCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 41494 | 0.76 | 0.082329 |
Target: 5'- aAGCCUuuGCCGCCUAC--CGCC-GCCa -3' miRNA: 3'- -UCGGAugCGGCGGAUGuuGCGGcCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 11578 | 0.76 | 0.089624 |
Target: 5'- aAGCC-AUGCCGCCcAgGGcCGCCGGCUg -3' miRNA: 3'- -UCGGaUGCGGCGGaUgUU-GCGGCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 27318 | 0.75 | 0.094825 |
Target: 5'- uGCCUcgGCCaagaGCCUGgGGCGCCGGCUg -3' miRNA: 3'- uCGGAugCGG----CGGAUgUUGCGGCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 8204 | 0.75 | 0.097531 |
Target: 5'- cGCCgacaccCGCaCGCCcACAaccaACGCCGGCCg -3' miRNA: 3'- uCGGau----GCG-GCGGaUGU----UGCGGCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 11263 | 0.75 | 0.100311 |
Target: 5'- gGGUUUGCGCUGCggcgCUGgGACGCuCGGCCa -3' miRNA: 3'- -UCGGAUGCGGCG----GAUgUUGCG-GCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 4630 | 0.75 | 0.103164 |
Target: 5'- uGGCCcGCGCUGCC-GCAGgGUCGGCa -3' miRNA: 3'- -UCGGaUGCGGCGGaUGUUgCGGCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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