miRNA display CGI


Results 21 - 40 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26667 3' -59.7 NC_005808.1 + 3544 0.68 0.299489
Target:  5'- uGCCaGCuGCCGCCgaACAGCGCagcagcgGGCUg -3'
miRNA:   3'- uCGGaUG-CGGCGGa-UGUUGCGg------CCGG- -5'
26667 3' -59.7 NC_005808.1 + 3871 0.66 0.398194
Target:  5'- cGCCUGC-CCaaCUACAacgaauuccagGCGCUGGCUu -3'
miRNA:   3'- uCGGAUGcGGcgGAUGU-----------UGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 3884 0.67 0.380361
Target:  5'- aGGCC-GCGCUGCCgu---CGCC-GCCg -3'
miRNA:   3'- -UCGGaUGCGGCGGauguuGCGGcCGG- -5'
26667 3' -59.7 NC_005808.1 + 3938 0.75 0.109103
Target:  5'- cGGCa-GCGCgGCCUACAGCGaCGGCg -3'
miRNA:   3'- -UCGgaUGCGgCGGAUGUUGCgGCCGg -5'
26667 3' -59.7 NC_005808.1 + 3992 0.68 0.322275
Target:  5'- cAGCagauagAUGuCCGCCcaaaAC-GCGCCGGCCa -3'
miRNA:   3'- -UCGga----UGC-GGCGGa---UGuUGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 4117 0.7 0.226624
Target:  5'- cAGCCUGCGCUGCagcguUGCuuC-CCGGCg -3'
miRNA:   3'- -UCGGAUGCGGCGg----AUGuuGcGGCCGg -5'
26667 3' -59.7 NC_005808.1 + 4254 0.69 0.285002
Target:  5'- uAGUCggUGCCgGCCguCAGCGCCGGCa -3'
miRNA:   3'- -UCGGauGCGG-CGGauGUUGCGGCCGg -5'
26667 3' -59.7 NC_005808.1 + 4354 0.66 0.388319
Target:  5'- uGGCCguUGCGuuGCCggUGCGcgugaagGCGaCGGCCg -3'
miRNA:   3'- -UCGG--AUGCggCGG--AUGU-------UGCgGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 4438 0.71 0.193584
Target:  5'- aAGUCggcCGUCGCCUucacgcgcaccgGCAACGCaaCGGCCa -3'
miRNA:   3'- -UCGGau-GCGGCGGA------------UGUUGCG--GCCGG- -5'
26667 3' -59.7 NC_005808.1 + 4630 0.75 0.103164
Target:  5'- uGGCCcGCGCUGCC-GCAGgGUCGGCa -3'
miRNA:   3'- -UCGGaUGCGGCGGaUGUUgCGGCCGg -5'
26667 3' -59.7 NC_005808.1 + 4697 0.68 0.314538
Target:  5'- uGCCgACcCUGCg-GCAGCGCgGGCCa -3'
miRNA:   3'- uCGGaUGcGGCGgaUGUUGCGgCCGG- -5'
26667 3' -59.7 NC_005808.1 + 4759 0.67 0.344688
Target:  5'- cGGCCgcgauguucucgGCGuUCGCCcACAcugcgcccagcACGCCGGCUg -3'
miRNA:   3'- -UCGGa-----------UGC-GGCGGaUGU-----------UGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 4867 0.66 0.425927
Target:  5'- cGGUCagguCGuuGCCcagcgcgGCGACGgCGGCCu -3'
miRNA:   3'- -UCGGau--GCggCGGa------UGUUGCgGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 4889 0.68 0.314538
Target:  5'- --aCUACGgCGaCCUGu--CGCCGGCCa -3'
miRNA:   3'- ucgGAUGCgGC-GGAUguuGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 4955 0.69 0.285002
Target:  5'- uGGCCgaaaacgAgGCCGCCgucGCcGCGCUGGgCa -3'
miRNA:   3'- -UCGGa------UgCGGCGGa--UGuUGCGGCCgG- -5'
26667 3' -59.7 NC_005808.1 + 5175 0.75 0.105502
Target:  5'- uGCCUGCcaCCGCCUGCAcgucgucgauauUGCCGGCUa -3'
miRNA:   3'- uCGGAUGc-GGCGGAUGUu-----------GCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 5298 0.67 0.380361
Target:  5'- cGGCC-ACGgCGUCgAUAuuuuccagguCGCCGGCCa -3'
miRNA:   3'- -UCGGaUGCgGCGGaUGUu---------GCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 5345 0.72 0.178699
Target:  5'- uGGCCgacaACGCCGCgaACAucaacACGgUGGCCg -3'
miRNA:   3'- -UCGGa---UGCGGCGgaUGU-----UGCgGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 5502 0.69 0.285002
Target:  5'- cGGCg-AUGCUGCCaaagucguaggAC-ACGCCGGCCg -3'
miRNA:   3'- -UCGgaUGCGGCGGa----------UGuUGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 5560 0.67 0.380361
Target:  5'- cGCCacgguaucgACGgCGCC---AACGCUGGCCg -3'
miRNA:   3'- uCGGa--------UGCgGCGGaugUUGCGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.