miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26673 3' -50.3 NC_005808.1 + 27198 0.68 0.786768
Target:  5'- uCGGUCGuccgGCAUcuucgccgGCCCGCAcgCgGACGCg -3'
miRNA:   3'- -GUCAGCu---UGUAa-------CGGGCGUa-G-UUGCG- -5'
26673 3' -50.3 NC_005808.1 + 11075 0.68 0.786768
Target:  5'- --cUCGAACG-UGUCCGgGUCGcGCGCg -3'
miRNA:   3'- gucAGCUUGUaACGGGCgUAGU-UGCG- -5'
26673 3' -50.3 NC_005808.1 + 32871 0.68 0.786768
Target:  5'- ---aCGAGCAguucGCCCGCGgcuUCGAgGCg -3'
miRNA:   3'- gucaGCUUGUaa--CGGGCGU---AGUUgCG- -5'
26673 3' -50.3 NC_005808.1 + 3269 0.68 0.797074
Target:  5'- ----gGAACAUUuCCCGCG-CAACGCc -3'
miRNA:   3'- gucagCUUGUAAcGGGCGUaGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 15986 0.68 0.807189
Target:  5'- -uGUCGAACAggUGCgCCGC----GCGCa -3'
miRNA:   3'- guCAGCUUGUa-ACG-GGCGuaguUGCG- -5'
26673 3' -50.3 NC_005808.1 + 26869 0.68 0.807189
Target:  5'- -uGUCGAGCGcaugGCCuCGCGccaguUCGAUGCc -3'
miRNA:   3'- guCAGCUUGUaa--CGG-GCGU-----AGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 18911 0.68 0.8171
Target:  5'- aGGUCGAugAggucggcGCCCGCGcUGGCGUu -3'
miRNA:   3'- gUCAGCUugUaa-----CGGGCGUaGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 22052 0.68 0.8171
Target:  5'- gCGGUCGucGCGcUUGCUCGgGUCGcggucgGCGCg -3'
miRNA:   3'- -GUCAGCu-UGU-AACGGGCgUAGU------UGCG- -5'
26673 3' -50.3 NC_005808.1 + 35218 0.68 0.8171
Target:  5'- aGGUCGccGCggUGCCCGCcgCuggacgaacGACGCc -3'
miRNA:   3'- gUCAGCu-UGuaACGGGCGuaG---------UUGCG- -5'
26673 3' -50.3 NC_005808.1 + 38881 0.67 0.825835
Target:  5'- ---gCGAGCAUgagcggaUGCgCCGCAUggggCAGCGCg -3'
miRNA:   3'- gucaGCUUGUA-------ACG-GGCGUA----GUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 4844 0.67 0.835325
Target:  5'- gUAGUCGAugAccauaggUUGCCCG-GUCAggucguugcccaGCGCg -3'
miRNA:   3'- -GUCAGCUugU-------AACGGGCgUAGU------------UGCG- -5'
26673 3' -50.3 NC_005808.1 + 8493 0.67 0.836261
Target:  5'- uGGUCG-GCAUaGUCCaCGUCGAUGCc -3'
miRNA:   3'- gUCAGCuUGUAaCGGGcGUAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 18744 0.67 0.844577
Target:  5'- -cGUCGAACGcgaccaccuuuUUGCCgGCgauuucuuccaucGUCAGCGUc -3'
miRNA:   3'- guCAGCUUGU-----------AACGGgCG-------------UAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 2272 0.67 0.845489
Target:  5'- -uGUCGAucaucgcguACAgUGCCgCGCgGUCGAUGCu -3'
miRNA:   3'- guCAGCU---------UGUaACGG-GCG-UAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 39503 0.67 0.845489
Target:  5'- --uUCGGugGUUGCCgCGUGUCGAaggGCa -3'
miRNA:   3'- gucAGCUugUAACGG-GCGUAGUUg--CG- -5'
26673 3' -50.3 NC_005808.1 + 20275 0.67 0.849111
Target:  5'- -uGUUGGccguCGUUGCCCGCAccaguagcggguugcUCGGCGg -3'
miRNA:   3'- guCAGCUu---GUAACGGGCGU---------------AGUUGCg -5'
26673 3' -50.3 NC_005808.1 + 20642 0.67 0.854468
Target:  5'- uCGGUCGuuccgcGCAcugUGCCCGCguugggccuugGUCGGCGg -3'
miRNA:   3'- -GUCAGCu-----UGUa--ACGGGCG-----------UAGUUGCg -5'
26673 3' -50.3 NC_005808.1 + 33000 0.67 0.854468
Target:  5'- -cGUCGAACucacGCCCGaggugcgCAACGUg -3'
miRNA:   3'- guCAGCUUGuaa-CGGGCgua----GUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 42208 0.67 0.863188
Target:  5'- aCAGUCGcGCGcUGgCCGCGcUCAAUcgGCa -3'
miRNA:   3'- -GUCAGCuUGUaACgGGCGU-AGUUG--CG- -5'
26673 3' -50.3 NC_005808.1 + 34054 0.66 0.871639
Target:  5'- aGGUCGAGCGcgGCCUGCGaUAccuGgGCa -3'
miRNA:   3'- gUCAGCUUGUaaCGGGCGUaGU---UgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.