miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26673 3' -50.3 NC_005808.1 + 12598 0.66 0.902616
Target:  5'- gCAGUUgGAGCAcgaugGCCCGU-UCGACGg -3'
miRNA:   3'- -GUCAG-CUUGUaa---CGGGCGuAGUUGCg -5'
26673 3' -50.3 NC_005808.1 + 15034 0.73 0.515511
Target:  5'- -cGUUGGuguugGCGaUGCCCGCGUUGAUGCg -3'
miRNA:   3'- guCAGCU-----UGUaACGGGCGUAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 15986 0.68 0.807189
Target:  5'- -uGUCGAACAggUGCgCCGC----GCGCa -3'
miRNA:   3'- guCAGCUUGUa-ACG-GGCGuaguUGCG- -5'
26673 3' -50.3 NC_005808.1 + 17434 0.66 0.909622
Target:  5'- --cUUGAGCAgugGCCCcgccaGCAUCGAgGCc -3'
miRNA:   3'- gucAGCUUGUaa-CGGG-----CGUAGUUgCG- -5'
26673 3' -50.3 NC_005808.1 + 17922 0.7 0.676054
Target:  5'- uGGgcgUGGACGUgGCCCGCGgcgGGCGCg -3'
miRNA:   3'- gUCa--GCUUGUAaCGGGCGUag-UUGCG- -5'
26673 3' -50.3 NC_005808.1 + 18744 0.67 0.844577
Target:  5'- -cGUCGAACGcgaccaccuuuUUGCCgGCgauuucuuccaucGUCAGCGUc -3'
miRNA:   3'- guCAGCUUGU-----------AACGGgCG-------------UAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 18911 0.68 0.8171
Target:  5'- aGGUCGAugAggucggcGCCCGCGcUGGCGUu -3'
miRNA:   3'- gUCAGCUugUaa-----CGGGCGUaGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 20275 0.67 0.849111
Target:  5'- -uGUUGGccguCGUUGCCCGCAccaguagcggguugcUCGGCGg -3'
miRNA:   3'- guCAGCUu---GUAACGGGCGU---------------AGUUGCg -5'
26673 3' -50.3 NC_005808.1 + 20642 0.67 0.854468
Target:  5'- uCGGUCGuuccgcGCAcugUGCCCGCguugggccuugGUCGGCGg -3'
miRNA:   3'- -GUCAGCu-----UGUa--ACGGGCG-----------UAGUUGCg -5'
26673 3' -50.3 NC_005808.1 + 21101 0.7 0.687551
Target:  5'- -cGUCGGugAgcgcguuuugcUUGCUgGUAUCGACGCu -3'
miRNA:   3'- guCAGCUugU-----------AACGGgCGUAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 21202 0.66 0.879815
Target:  5'- uGGUCuGcGCGUUGCuuGCGgauaAGCGCc -3'
miRNA:   3'- gUCAG-CuUGUAACGggCGUag--UUGCG- -5'
26673 3' -50.3 NC_005808.1 + 21259 0.69 0.765631
Target:  5'- gGGUCGA----UGCCCaGCAugUCGGCGUa -3'
miRNA:   3'- gUCAGCUuguaACGGG-CGU--AGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 22052 0.68 0.8171
Target:  5'- gCGGUCGucGCGcUUGCUCGgGUCGcggucgGCGCg -3'
miRNA:   3'- -GUCAGCu-UGU-AACGGGCgUAGU------UGCG- -5'
26673 3' -50.3 NC_005808.1 + 24785 0.69 0.732815
Target:  5'- gGGUCGuccuCGaUGCCCGCGUUGAaguCGCc -3'
miRNA:   3'- gUCAGCuu--GUaACGGGCGUAGUU---GCG- -5'
26673 3' -50.3 NC_005808.1 + 26869 0.68 0.807189
Target:  5'- -uGUCGAGCGcaugGCCuCGCGccaguUCGAUGCc -3'
miRNA:   3'- guCAGCUUGUaa--CGG-GCGU-----AGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 27198 0.68 0.786768
Target:  5'- uCGGUCGuccgGCAUcuucgccgGCCCGCAcgCgGACGCg -3'
miRNA:   3'- -GUCAGCu---UGUAa-------CGGGCGUa-G-UUGCG- -5'
26673 3' -50.3 NC_005808.1 + 27542 1.13 0.001274
Target:  5'- uCAGUCGAACAUUGCCCGCAUCAACGCg -3'
miRNA:   3'- -GUCAGCUUGUAACGGGCGUAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 30709 0.68 0.785727
Target:  5'- uGG-CGGGCAUgGCUuucuccaucggaaUGCGUCAACGCa -3'
miRNA:   3'- gUCaGCUUGUAaCGG-------------GCGUAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 31852 0.68 0.780497
Target:  5'- aAGUCGAGCGc-GCCCuuggcgagcagcaagGCGaCGACGCa -3'
miRNA:   3'- gUCAGCUUGUaaCGGG---------------CGUaGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 32871 0.68 0.786768
Target:  5'- ---aCGAGCAguucGCCCGCGgcuUCGAgGCg -3'
miRNA:   3'- gucaGCUUGUaa--CGGGCGU---AGUUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.