Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26673 | 3' | -50.3 | NC_005808.1 | + | 24785 | 0.69 | 0.732815 |
Target: 5'- gGGUCGuccuCGaUGCCCGCGUUGAaguCGCc -3' miRNA: 3'- gUCAGCuu--GUaACGGGCGUAGUU---GCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 22052 | 0.68 | 0.8171 |
Target: 5'- gCGGUCGucGCGcUUGCUCGgGUCGcggucgGCGCg -3' miRNA: 3'- -GUCAGCu-UGU-AACGGGCgUAGU------UGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 21259 | 0.69 | 0.765631 |
Target: 5'- gGGUCGA----UGCCCaGCAugUCGGCGUa -3' miRNA: 3'- gUCAGCUuguaACGGG-CGU--AGUUGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 21202 | 0.66 | 0.879815 |
Target: 5'- uGGUCuGcGCGUUGCuuGCGgauaAGCGCc -3' miRNA: 3'- gUCAG-CuUGUAACGggCGUag--UUGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 21101 | 0.7 | 0.687551 |
Target: 5'- -cGUCGGugAgcgcguuuugcUUGCUgGUAUCGACGCu -3' miRNA: 3'- guCAGCUugU-----------AACGGgCGUAGUUGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 20642 | 0.67 | 0.854468 |
Target: 5'- uCGGUCGuuccgcGCAcugUGCCCGCguugggccuugGUCGGCGg -3' miRNA: 3'- -GUCAGCu-----UGUa--ACGGGCG-----------UAGUUGCg -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 20275 | 0.67 | 0.849111 |
Target: 5'- -uGUUGGccguCGUUGCCCGCAccaguagcggguugcUCGGCGg -3' miRNA: 3'- guCAGCUu---GUAACGGGCGU---------------AGUUGCg -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 18911 | 0.68 | 0.8171 |
Target: 5'- aGGUCGAugAggucggcGCCCGCGcUGGCGUu -3' miRNA: 3'- gUCAGCUugUaa-----CGGGCGUaGUUGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 18744 | 0.67 | 0.844577 |
Target: 5'- -cGUCGAACGcgaccaccuuuUUGCCgGCgauuucuuccaucGUCAGCGUc -3' miRNA: 3'- guCAGCUUGU-----------AACGGgCG-------------UAGUUGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 17922 | 0.7 | 0.676054 |
Target: 5'- uGGgcgUGGACGUgGCCCGCGgcgGGCGCg -3' miRNA: 3'- gUCa--GCUUGUAaCGGGCGUag-UUGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 17434 | 0.66 | 0.909622 |
Target: 5'- --cUUGAGCAgugGCCCcgccaGCAUCGAgGCc -3' miRNA: 3'- gucAGCUUGUaa-CGGG-----CGUAGUUgCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 15986 | 0.68 | 0.807189 |
Target: 5'- -uGUCGAACAggUGCgCCGC----GCGCa -3' miRNA: 3'- guCAGCUUGUa-ACG-GGCGuaguUGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 15034 | 0.73 | 0.515511 |
Target: 5'- -cGUUGGuguugGCGaUGCCCGCGUUGAUGCg -3' miRNA: 3'- guCAGCU-----UGUaACGGGCGUAGUUGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 12598 | 0.66 | 0.902616 |
Target: 5'- gCAGUUgGAGCAcgaugGCCCGU-UCGACGg -3' miRNA: 3'- -GUCAG-CUUGUaa---CGGGCGuAGUUGCg -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 11075 | 0.68 | 0.786768 |
Target: 5'- --cUCGAACG-UGUCCGgGUCGcGCGCg -3' miRNA: 3'- gucAGCUUGUaACGGGCgUAGU-UGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 10852 | 0.75 | 0.410546 |
Target: 5'- uGGUCGAGCAg-GCCCuGCguggcuucgGUCGGCGCg -3' miRNA: 3'- gUCAGCUUGUaaCGGG-CG---------UAGUUGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 9192 | 0.71 | 0.629728 |
Target: 5'- -cGUCG-ACGUUgGCCUGCucggCGGCGCg -3' miRNA: 3'- guCAGCuUGUAA-CGGGCGua--GUUGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 8830 | 0.66 | 0.87164 |
Target: 5'- gGGUCGGGCca-GCCgcaaCGCGggcCAGCGCg -3' miRNA: 3'- gUCAGCUUGuaaCGG----GCGUa--GUUGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 8666 | 0.7 | 0.698989 |
Target: 5'- gCGGUCG-GCAUUGCgUGCcgC-GCGCa -3' miRNA: 3'- -GUCAGCuUGUAACGgGCGuaGuUGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 8529 | 0.66 | 0.902616 |
Target: 5'- cCGG-CGAAC-UUGCCCagGUAUCGcaggccGCGCu -3' miRNA: 3'- -GUCaGCUUGuAACGGG--CGUAGU------UGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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