miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26673 3' -50.3 NC_005808.1 + 42208 0.67 0.863188
Target:  5'- aCAGUCGcGCGcUGgCCGCGcUCAAUcgGCa -3'
miRNA:   3'- -GUCAGCuUGUaACgGGCGU-AGUUG--CG- -5'
26673 3' -50.3 NC_005808.1 + 42078 0.69 0.721634
Target:  5'- aCGGcCGAACAgaaccGCCUGCAagccgccgCGGCGCa -3'
miRNA:   3'- -GUCaGCUUGUaa---CGGGCGUa-------GUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 39851 0.66 0.887707
Target:  5'- uGGUCG-GCAc-GCCCGag-CAGCGCc -3'
miRNA:   3'- gUCAGCuUGUaaCGGGCguaGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 39540 0.66 0.905455
Target:  5'- aAGUgGGgcGCAUucucggcuccuggauUGCCCGCGUgAAuCGCa -3'
miRNA:   3'- gUCAgCU--UGUA---------------ACGGGCGUAgUU-GCG- -5'
26673 3' -50.3 NC_005808.1 + 39503 0.67 0.845489
Target:  5'- --uUCGGugGUUGCCgCGUGUCGAaggGCa -3'
miRNA:   3'- gucAGCUugUAACGG-GCGUAGUUg--CG- -5'
26673 3' -50.3 NC_005808.1 + 39126 0.73 0.493556
Target:  5'- -cGUCGAACuc-GCCCGCGaacaUCGggGCGCg -3'
miRNA:   3'- guCAGCUUGuaaCGGGCGU----AGU--UGCG- -5'
26673 3' -50.3 NC_005808.1 + 38881 0.67 0.825835
Target:  5'- ---gCGAGCAUgagcggaUGCgCCGCAUggggCAGCGCg -3'
miRNA:   3'- gucaGCUUGUA-------ACG-GGCGUA----GUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 38411 0.66 0.89531
Target:  5'- gCGGcC-AACA-UGCCCGCcAUCGAgGCg -3'
miRNA:   3'- -GUCaGcUUGUaACGGGCG-UAGUUgCG- -5'
26673 3' -50.3 NC_005808.1 + 37528 0.66 0.887707
Target:  5'- gCGGUCG-GCAaUGCCgacaaCAUCAAUGCa -3'
miRNA:   3'- -GUCAGCuUGUaACGGgc---GUAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 35218 0.68 0.8171
Target:  5'- aGGUCGccGCggUGCCCGCcgCuggacgaacGACGCc -3'
miRNA:   3'- gUCAGCu-UGuaACGGGCGuaG---------UUGCG- -5'
26673 3' -50.3 NC_005808.1 + 34552 0.7 0.710354
Target:  5'- uGGUCGAGCAgcgGUUgaGCGUCGAgGCu -3'
miRNA:   3'- gUCAGCUUGUaa-CGGg-CGUAGUUgCG- -5'
26673 3' -50.3 NC_005808.1 + 34054 0.66 0.871639
Target:  5'- aGGUCGAGCGcgGCCUGCGaUAccuGgGCa -3'
miRNA:   3'- gUCAGCUUGUaaCGGGCGUaGU---UgCG- -5'
26673 3' -50.3 NC_005808.1 + 34034 0.72 0.560515
Target:  5'- -uGUCGcGCcugucgcUGCCCGcCAUCGGCGCg -3'
miRNA:   3'- guCAGCuUGua-----ACGGGC-GUAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 33000 0.67 0.854468
Target:  5'- -cGUCGAACucacGCCCGaggugcgCAACGUg -3'
miRNA:   3'- guCAGCUUGuaa-CGGGCgua----GUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 32871 0.68 0.786768
Target:  5'- ---aCGAGCAguucGCCCGCGgcuUCGAgGCg -3'
miRNA:   3'- gucaGCUUGUaa--CGGGCGU---AGUUgCG- -5'
26673 3' -50.3 NC_005808.1 + 31852 0.68 0.780497
Target:  5'- aAGUCGAGCGc-GCCCuuggcgagcagcaagGCGaCGACGCa -3'
miRNA:   3'- gUCAGCUUGUaaCGGG---------------CGUaGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 30709 0.68 0.785727
Target:  5'- uGG-CGGGCAUgGCUuucuccaucggaaUGCGUCAACGCa -3'
miRNA:   3'- gUCaGCUUGUAaCGG-------------GCGUAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 27542 1.13 0.001274
Target:  5'- uCAGUCGAACAUUGCCCGCAUCAACGCg -3'
miRNA:   3'- -GUCAGCUUGUAACGGGCGUAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 27198 0.68 0.786768
Target:  5'- uCGGUCGuccgGCAUcuucgccgGCCCGCAcgCgGACGCg -3'
miRNA:   3'- -GUCAGCu---UGUAa-------CGGGCGUa-G-UUGCG- -5'
26673 3' -50.3 NC_005808.1 + 26869 0.68 0.807189
Target:  5'- -uGUCGAGCGcaugGCCuCGCGccaguUCGAUGCc -3'
miRNA:   3'- guCAGCUUGUaa--CGG-GCGU-----AGUUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.