Results 61 - 80 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26677 | 3' | -54.5 | NC_005808.1 | + | 25049 | 0.7 | 0.448317 |
Target: 5'- -cGCGCgAUCCGCCGUuaccAUCGgGCaGCa -3' miRNA: 3'- guUGCGgUAGGCGGUA----UAGCaCGgCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 18117 | 0.7 | 0.438336 |
Target: 5'- -cGCGCCGUCCGgUAcGUCGaacuUGUCGCc -3' miRNA: 3'- guUGCGGUAGGCgGUaUAGC----ACGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 36787 | 0.7 | 0.438336 |
Target: 5'- -cACGCCAugcccgacuaUCCGCUGg--CGcUGCCGCg -3' miRNA: 3'- guUGCGGU----------AGGCGGUauaGC-ACGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 13527 | 0.72 | 0.34607 |
Target: 5'- --uUGCCGUCCgcGCCGaacUGUCG-GCCGCc -3' miRNA: 3'- guuGCGGUAGG--CGGU---AUAGCaCGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 32069 | 0.73 | 0.282874 |
Target: 5'- gCGACGCCAUgcucaucggccCCGCCAacaCG-GCCGCg -3' miRNA: 3'- -GUUGCGGUA-----------GGCGGUauaGCaCGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 24416 | 0.68 | 0.5652 |
Target: 5'- aAGCGCag-CCgGCCcgauuUGUCgGUGCCGCg -3' miRNA: 3'- gUUGCGguaGG-CGGu----AUAG-CACGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 38788 | 0.68 | 0.576311 |
Target: 5'- aCGGCGCCcccgaCCGCCugGUCaUGCUGCc -3' miRNA: 3'- -GUUGCGGua---GGCGGuaUAGcACGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 26162 | 0.68 | 0.58747 |
Target: 5'- --uCGCCGUCUGCgAUG-CG-GUCGCa -3' miRNA: 3'- guuGCGGUAGGCGgUAUaGCaCGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 4270 | 0.66 | 0.699561 |
Target: 5'- uCAGCGCCGgcauggugaUgGCCGUGUCG-GCgGUg -3' miRNA: 3'- -GUUGCGGUa--------GgCGGUAUAGCaCGgCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 34867 | 0.66 | 0.699561 |
Target: 5'- aCAGCaaGCCggCCGCCGag-CGUgcGCUGCa -3' miRNA: 3'- -GUUG--CGGuaGGCGGUauaGCA--CGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 27828 | 0.66 | 0.688471 |
Target: 5'- -cGCGCUGcCCGCgGUggCGccgGCCGCg -3' miRNA: 3'- guUGCGGUaGGCGgUAuaGCa--CGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 25323 | 0.66 | 0.688471 |
Target: 5'- cCGGCGCUcgUCGCCGggAUUGUccagGCCGg -3' miRNA: 3'- -GUUGCGGuaGGCGGUa-UAGCA----CGGCg -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 21734 | 0.66 | 0.688471 |
Target: 5'- gGAUGCCA-CCGUUGgg-CGcgGCCGCg -3' miRNA: 3'- gUUGCGGUaGGCGGUauaGCa-CGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 11596 | 0.66 | 0.688471 |
Target: 5'- --cCGCCGgcuggCCGCCGggcagcaGUGCCaGCg -3' miRNA: 3'- guuGCGGUa----GGCGGUauag---CACGG-CG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 7972 | 0.66 | 0.688471 |
Target: 5'- uCGGCGCgCAUCgGguuuCCAUGUC--GCCGCg -3' miRNA: 3'- -GUUGCG-GUAGgC----GGUAUAGcaCGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 2452 | 0.66 | 0.688471 |
Target: 5'- uCGGCGCCAcgaugUUGCaCAaggCGUGCUGCa -3' miRNA: 3'- -GUUGCGGUa----GGCG-GUauaGCACGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 1687 | 0.66 | 0.684018 |
Target: 5'- -cGCGCagguagucgagaaAUUCGCCGUGggccggCGUGCCGg -3' miRNA: 3'- guUGCGg------------UAGGCGGUAUa-----GCACGGCg -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 31498 | 0.66 | 0.677324 |
Target: 5'- uGACauaCCuugCCGCCGg--CGUGCUGCu -3' miRNA: 3'- gUUGc--GGua-GGCGGUauaGCACGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 4016 | 0.67 | 0.621144 |
Target: 5'- -cGCGCCggCCaCCAgcGUCaUGCCGCg -3' miRNA: 3'- guUGCGGuaGGcGGUa-UAGcACGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 8806 | 0.67 | 0.598668 |
Target: 5'- -cGCGCCGgucaguaccgaUCUGCUggGUCGggccaGCCGCa -3' miRNA: 3'- guUGCGGU-----------AGGCGGuaUAGCa----CGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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