miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26678 5' -52.6 NC_005808.1 + 38178 0.67 0.701051
Target:  5'- ---gGCCgGGUACgACCuACGAcuGCCGCa -3'
miRNA:   3'- gaaaCGG-CCGUGaUGGuUGUU--CGGCG- -5'
26678 5' -52.6 NC_005808.1 + 37965 0.66 0.766961
Target:  5'- -cUUGCCGacccugcggcaGCGCggGCCAACAuuGGCCugGCu -3'
miRNA:   3'- gaAACGGC-----------CGUGa-UGGUUGU--UCGG--CG- -5'
26678 5' -52.6 NC_005808.1 + 37905 0.68 0.65547
Target:  5'- -cUUGCCGGCcauuCUcGCCGGCuauccGGCgCGCu -3'
miRNA:   3'- gaAACGGCCGu---GA-UGGUUGu----UCG-GCG- -5'
26678 5' -52.6 NC_005808.1 + 37787 0.67 0.701051
Target:  5'- ---cGCCGGCcCcgACCucuACAAGCUGg -3'
miRNA:   3'- gaaaCGGCCGuGa-UGGu--UGUUCGGCg -5'
26678 5' -52.6 NC_005808.1 + 37680 0.68 0.666932
Target:  5'- ---cGCgGGCaucGCUGCCGACGuuuccaccguGGCCGa -3'
miRNA:   3'- gaaaCGgCCG---UGAUGGUUGU----------UCGGCg -5'
26678 5' -52.6 NC_005808.1 + 37530 0.69 0.596898
Target:  5'- ---gGUCGGCAaUGCCGACAacaucaaugcagcGGUCGCc -3'
miRNA:   3'- gaaaCGGCCGUgAUGGUUGU-------------UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 37467 0.69 0.598043
Target:  5'- --cUGCgCGGCACguugcaguUCAACGgcgccAGCCGCa -3'
miRNA:   3'- gaaACG-GCCGUGau------GGUUGU-----UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 37362 0.68 0.65547
Target:  5'- --cUGCCGGCcgaacugcgcgaACUGCUGgguauccgguuGCAGGCCaGCa -3'
miRNA:   3'- gaaACGGCCG------------UGAUGGU-----------UGUUCGG-CG- -5'
26678 5' -52.6 NC_005808.1 + 37290 0.69 0.596898
Target:  5'- ---gGCCGGCGaccuggaaaauauCgacgccgugGCCGACAAcGCCGCg -3'
miRNA:   3'- gaaaCGGCCGU-------------Ga--------UGGUUGUU-CGGCG- -5'
26678 5' -52.6 NC_005808.1 + 37077 0.68 0.65547
Target:  5'- --cUGCCGGCcuggaACUACCAAggcacCGAGUuggCGCu -3'
miRNA:   3'- gaaACGGCCG-----UGAUGGUU-----GUUCG---GCG- -5'
26678 5' -52.6 NC_005808.1 + 36993 0.68 0.643986
Target:  5'- ---cGCCGugGCUACCAACGAGgCGg -3'
miRNA:   3'- gaaaCGGCcgUGAUGGUUGUUCgGCg -5'
26678 5' -52.6 NC_005808.1 + 36806 0.68 0.666932
Target:  5'- ---cGCUGGCGCUGCCGcgaugGCGGGacaCGa -3'
miRNA:   3'- gaaaCGGCCGUGAUGGU-----UGUUCg--GCg -5'
26678 5' -52.6 NC_005808.1 + 36219 0.71 0.465467
Target:  5'- ---gGCCGGCcugcgccugAUUGCCGACGugGGCCGg -3'
miRNA:   3'- gaaaCGGCCG---------UGAUGGUUGU--UCGGCg -5'
26678 5' -52.6 NC_005808.1 + 35512 0.68 0.643986
Target:  5'- ---cGUgGGCGC-GCCGugGguaGGCCGCg -3'
miRNA:   3'- gaaaCGgCCGUGaUGGUugU---UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 34984 0.68 0.643986
Target:  5'- --gUGuCCGGCGCUGCgCGACcacguGCUGUc -3'
miRNA:   3'- gaaAC-GGCCGUGAUG-GUUGuu---CGGCG- -5'
26678 5' -52.6 NC_005808.1 + 34949 0.66 0.776446
Target:  5'- --gUGUaCGGCAaggaGCCGGCGugggucgAGCCGCg -3'
miRNA:   3'- gaaACG-GCCGUga--UGGUUGU-------UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 34873 0.68 0.63134
Target:  5'- ---aGCCGGCcgccgagcgugcGCUGCaguucauCGGCAAGCCGg -3'
miRNA:   3'- gaaaCGGCCG------------UGAUG-------GUUGUUCGGCg -5'
26678 5' -52.6 NC_005808.1 + 34460 0.69 0.620993
Target:  5'- ---cGCCGacacccGCACgcccacaACCAACGccGGCCGCg -3'
miRNA:   3'- gaaaCGGC------CGUGa------UGGUUGU--UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 34221 0.67 0.723452
Target:  5'- ---aGCCaGCGCgagGCCGgguuCGAGCCGg -3'
miRNA:   3'- gaaaCGGcCGUGa--UGGUu---GUUCGGCg -5'
26678 5' -52.6 NC_005808.1 + 33989 0.68 0.666932
Target:  5'- ---gGCCGagaaGCGCaACCAGCuuauccagcaccAGGCCGCa -3'
miRNA:   3'- gaaaCGGC----CGUGaUGGUUG------------UUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.