miRNA display CGI


Results 41 - 60 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26678 5' -52.6 NC_005808.1 + 18093 0.67 0.734511
Target:  5'- ---aGCCGGCGCgaACCAGgAcGCCuucGCg -3'
miRNA:   3'- gaaaCGGCCGUGa-UGGUUgUuCGG---CG- -5'
26678 5' -52.6 NC_005808.1 + 14819 0.67 0.734511
Target:  5'- ---cGgCGGCGCUGCCuucgccCAGGUCGa -3'
miRNA:   3'- gaaaCgGCCGUGAUGGuu----GUUCGGCg -5'
26678 5' -52.6 NC_005808.1 + 4293 0.67 0.734511
Target:  5'- --nUGUCGGCggugaACUgcACCAGCuuGCCGUu -3'
miRNA:   3'- gaaACGGCCG-----UGA--UGGUUGuuCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 24067 0.67 0.734511
Target:  5'- --aUGCCGcGCACagUAgCGGCGA-CCGCg -3'
miRNA:   3'- gaaACGGC-CGUG--AUgGUUGUUcGGCG- -5'
26678 5' -52.6 NC_005808.1 + 41608 0.67 0.727888
Target:  5'- --gUGaaccaCGGCACcgGCCAggcggccaaguggcuGCAAGCUGCc -3'
miRNA:   3'- gaaACg----GCCGUGa-UGGU---------------UGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 5122 0.67 0.727888
Target:  5'- ---gGCUGGCGCcguugaacugcaacgUGCCGcGCAGGCgGCc -3'
miRNA:   3'- gaaaCGGCCGUG---------------AUGGU-UGUUCGgCG- -5'
26678 5' -52.6 NC_005808.1 + 4178 0.67 0.723452
Target:  5'- ---aGCCGGcCGCcucgaugGCgGGCAuguuGGCCGCg -3'
miRNA:   3'- gaaaCGGCC-GUGa------UGgUUGU----UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 30287 0.67 0.723452
Target:  5'- ---cGCCGGaaaACgucggguagcGCCccuGCGAGCCGCu -3'
miRNA:   3'- gaaaCGGCCg--UGa---------UGGu--UGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 34221 0.67 0.723452
Target:  5'- ---aGCCaGCGCgagGCCGgguuCGAGCCGg -3'
miRNA:   3'- gaaaCGGcCGUGa--UGGUu---GUUCGGCg -5'
26678 5' -52.6 NC_005808.1 + 19945 0.67 0.723452
Target:  5'- -cUUGUCGGCcguggacagGCaACCcagguuucgGGCAGGCCGCc -3'
miRNA:   3'- gaAACGGCCG---------UGaUGG---------UUGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 5037 0.67 0.723452
Target:  5'- --aUGCCccgcucgauGGCGucCUGCUugagcACAGGCCGCg -3'
miRNA:   3'- gaaACGG---------CCGU--GAUGGu----UGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 26482 0.67 0.723452
Target:  5'- ---cGUCGGgGCcACCGACGugcAGCCGg -3'
miRNA:   3'- gaaaCGGCCgUGaUGGUUGU---UCGGCg -5'
26678 5' -52.6 NC_005808.1 + 467 0.67 0.716769
Target:  5'- -cUUGCgGGCGCUGucgcggucggaugccUCGGCAGcauacugcGCCGCg -3'
miRNA:   3'- gaAACGgCCGUGAU---------------GGUUGUU--------CGGCG- -5'
26678 5' -52.6 NC_005808.1 + 9248 0.67 0.712295
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 9392 0.67 0.712295
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 9344 0.67 0.712295
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 9296 0.67 0.712295
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 9200 0.67 0.712295
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 9378 0.67 0.712295
Target:  5'- ---gGCCGcguGCAUUgugcaGCCAcugcaugucgcGCAGGCCGCg -3'
miRNA:   3'- gaaaCGGC---CGUGA-----UGGU-----------UGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 9104 0.67 0.712295
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.