miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26681 5' -61.6 NC_005808.1 + 29657 0.67 0.26832
Target:  5'- aUGAGgUaGcCGuuGCCcagcaGGGCGCGGCCGu -3'
miRNA:   3'- -ACUUgA-C-GCggCGGa----CCCGCGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 16450 0.67 0.26832
Target:  5'- uUGAACacgGCGUCGUagaucggGGGCGUGACgGa -3'
miRNA:   3'- -ACUUGa--CGCGGCGga-----CCCGCGCUGgU- -5'
26681 5' -61.6 NC_005808.1 + 17927 0.67 0.26832
Target:  5'- gUGGACgugGC-CCGCggcGGGCGCGACa- -3'
miRNA:   3'- -ACUUGa--CGcGGCGga-CCCGCGCUGgu -5'
26681 5' -61.6 NC_005808.1 + 8730 0.67 0.261656
Target:  5'- aGAugUGC-CCGgC-GGGCGCGGCg- -3'
miRNA:   3'- aCUugACGcGGCgGaCCCGCGCUGgu -5'
26681 5' -61.6 NC_005808.1 + 21722 0.67 0.255128
Target:  5'- cGAAC-GCGguacggaUGCCaccguUGGGCGCGGCCGc -3'
miRNA:   3'- aCUUGaCGCg------GCGG-----ACCCGCGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 5028 0.67 0.254482
Target:  5'- cGAcuACUGCGUugauauuCGCCUGGuugGCGACCGc -3'
miRNA:   3'- aCU--UGACGCG-------GCGGACCcg-CGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 25757 0.68 0.248734
Target:  5'- cUGGGC-GCGCUG-CUGGGCgGCGGCa- -3'
miRNA:   3'- -ACUUGaCGCGGCgGACCCG-CGCUGgu -5'
26681 5' -61.6 NC_005808.1 + 10227 0.68 0.241854
Target:  5'- --uGCUGgGCgGCCgGGGCcucggcgGCGACCGc -3'
miRNA:   3'- acuUGACgCGgCGGaCCCG-------CGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 23668 0.68 0.236343
Target:  5'- cGAACUGaCGaaaaaCGCCagcgcGGGCGcCGACCu -3'
miRNA:   3'- aCUUGAC-GCg----GCGGa----CCCGC-GCUGGu -5'
26681 5' -61.6 NC_005808.1 + 15705 0.68 0.236343
Target:  5'- aGAAg-GCGuCCGCCUGGGCaucgaacuggcGCGagGCCAu -3'
miRNA:   3'- aCUUgaCGC-GGCGGACCCG-----------CGC--UGGU- -5'
26681 5' -61.6 NC_005808.1 + 33954 0.68 0.230344
Target:  5'- cGAguACgGCGCgGCCUGGG-GCGuuuCCGa -3'
miRNA:   3'- aCU--UGaCGCGgCGGACCCgCGCu--GGU- -5'
26681 5' -61.6 NC_005808.1 + 34046 0.68 0.230344
Target:  5'- --cGCUGC-CCGCCaucGGCGCGGCUg -3'
miRNA:   3'- acuUGACGcGGCGGac-CCGCGCUGGu -5'
26681 5' -61.6 NC_005808.1 + 14900 0.68 0.230344
Target:  5'- cGAGC--CGCUGCC-GGcGCGCGGCCu -3'
miRNA:   3'- aCUUGacGCGGCGGaCC-CGCGCUGGu -5'
26681 5' -61.6 NC_005808.1 + 17520 0.68 0.224474
Target:  5'- cGGGC-GCGCUGCgCUGGGUgGCGAUg- -3'
miRNA:   3'- aCUUGaCGCGGCG-GACCCG-CGCUGgu -5'
26681 5' -61.6 NC_005808.1 + 16989 0.68 0.221013
Target:  5'- -cGACcGCGCCGCCgugguugccacugccUGGGCcGCaGACCGc -3'
miRNA:   3'- acUUGaCGCGGCGG---------------ACCCG-CG-CUGGU- -5'
26681 5' -61.6 NC_005808.1 + 41288 0.68 0.218732
Target:  5'- cGGcCUGguggcCGUCGcCCUGGGCGCGGCg- -3'
miRNA:   3'- aCUuGAC-----GCGGC-GGACCCGCGCUGgu -5'
26681 5' -61.6 NC_005808.1 + 34193 0.68 0.218164
Target:  5'- cGAACUGCucGCUGCCcgacacgUGGGCgGCGAUUc -3'
miRNA:   3'- aCUUGACG--CGGCGG-------ACCCG-CGCUGGu -5'
26681 5' -61.6 NC_005808.1 + 32909 0.68 0.215347
Target:  5'- aGAACUGCgGCCacgGCCUGcacGGCggcuguucggccaggGCGACCAc -3'
miRNA:   3'- aCUUGACG-CGG---CGGAC---CCG---------------CGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 29930 0.68 0.213115
Target:  5'- cGAcAC-GCGCCGCgcaugaUGGGCGaCGACCc -3'
miRNA:   3'- aCU-UGaCGCGGCGg-----ACCCGC-GCUGGu -5'
26681 5' -61.6 NC_005808.1 + 16142 0.69 0.194939
Target:  5'- aGGACUGCgGCCGCacgcugaugguggUGGGCGUuACCGc -3'
miRNA:   3'- aCUUGACG-CGGCGg------------ACCCGCGcUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.