miRNA display CGI


Results 1 - 20 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26683 5' -52.6 NC_005808.1 + 25024 1.15 0.000541
Target:  5'- aGCUGCGAAAUCGACAACACCGGCGCCg -3'
miRNA:   3'- -CGACGCUUUAGCUGUUGUGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 27819 0.72 0.453643
Target:  5'- --aGCGAcaucgugaagcaGAUCGACAccgacACGCUGcGCGCCa -3'
miRNA:   3'- cgaCGCU------------UUAGCUGU-----UGUGGC-CGCGG- -5'
26683 5' -52.6 NC_005808.1 + 20028 0.71 0.510221
Target:  5'- cGCgGCGAGaagcggcacaacaacAuccUCGACAACACCGGCacGCg -3'
miRNA:   3'- -CGaCGCUU---------------U---AGCUGUUGUGGCCG--CGg -5'
26683 5' -52.6 NC_005808.1 + 14023 0.66 0.821221
Target:  5'- cGCUGcCGGuggcCGACgugcgcgccgcgAugGCCGGCgGCCg -3'
miRNA:   3'- -CGAC-GCUuua-GCUG------------UugUGGCCG-CGG- -5'
26683 5' -52.6 NC_005808.1 + 23540 0.76 0.257534
Target:  5'- --gGCGAggacacgcuGAUCGACGcCGCCGGCgGCCg -3'
miRNA:   3'- cgaCGCU---------UUAGCUGUuGUGGCCG-CGG- -5'
26683 5' -52.6 NC_005808.1 + 32133 0.76 0.264414
Target:  5'- uGCUGCGcGAcuUCcagGGCGACGCCaagGGCGCCa -3'
miRNA:   3'- -CGACGCuUU--AG---CUGUUGUGG---CCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 17939 0.76 0.285947
Target:  5'- cGCgGCGGGcgCGACAACaccauccugcccGCCGGCacGCCa -3'
miRNA:   3'- -CGaCGCUUuaGCUGUUG------------UGGCCG--CGG- -5'
26683 5' -52.6 NC_005808.1 + 37011 0.74 0.341497
Target:  5'- --gGCGGAcAUCGACAcgguggcggccaGCGuuGGCGCCg -3'
miRNA:   3'- cgaCGCUU-UAGCUGU------------UGUggCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 41601 0.73 0.385719
Target:  5'- cGCUGCGGugaaCcACGGCACCGGCcaggcgGCCa -3'
miRNA:   3'- -CGACGCUuua-GcUGUUGUGGCCG------CGG- -5'
26683 5' -52.6 NC_005808.1 + 21834 0.72 0.453643
Target:  5'- cGC-GCGAugAGUCGagcgcggcGCAGCGCCucuacGGCGCCa -3'
miRNA:   3'- -CGaCGCU--UUAGC--------UGUUGUGG-----CCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 24124 0.73 0.404437
Target:  5'- --gGUGGAcgaAUCGGcCGACgccGCCGGCGCCg -3'
miRNA:   3'- cgaCGCUU---UAGCU-GUUG---UGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 7137 0.74 0.366692
Target:  5'- --cGCGAAGUCGuCGGCugCGGCcuggaugaccaggGCCg -3'
miRNA:   3'- cgaCGCUUUAGCuGUUGugGCCG-------------CGG- -5'
26683 5' -52.6 NC_005808.1 + 34815 0.8 0.15288
Target:  5'- gGCgGCGAAGg-GugGACGCCGGCGCa -3'
miRNA:   3'- -CGaCGCUUUagCugUUGUGGCCGCGg -5'
26683 5' -52.6 NC_005808.1 + 38718 0.72 0.443539
Target:  5'- gGCgGCGA---CGGCAGCGCggccuacagcgaCGGCGCCu -3'
miRNA:   3'- -CGaCGCUuuaGCUGUUGUG------------GCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 15251 0.78 0.198756
Target:  5'- uGCUGCGAGGUCGGCccggccuacguggaaAGCAaCGcGCGCCu -3'
miRNA:   3'- -CGACGCUUUAGCUG---------------UUGUgGC-CGCGG- -5'
26683 5' -52.6 NC_005808.1 + 13802 0.74 0.344897
Target:  5'- gGCUGCucaAGAUCGGCAaccagggcaagcgcgACGCCGugcGCGCCg -3'
miRNA:   3'- -CGACGc--UUUAGCUGU---------------UGUGGC---CGCGG- -5'
26683 5' -52.6 NC_005808.1 + 37254 0.72 0.452627
Target:  5'- gGCUGUcgccaacGAcAUCGACAGCgugguauccgugGCCGGCGaCCu -3'
miRNA:   3'- -CGACG-------CUuUAGCUGUUG------------UGGCCGC-GG- -5'
26683 5' -52.6 NC_005808.1 + 9727 0.72 0.484679
Target:  5'- --aGuCGGGcgCGACAAUcUCGGCGCCg -3'
miRNA:   3'- cgaC-GCUUuaGCUGUUGuGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 6599 0.76 0.257534
Target:  5'- gGCUGCGGucuuuGUCGAUGACcaGCgGGCGCg -3'
miRNA:   3'- -CGACGCUu----UAGCUGUUG--UGgCCGCGg -5'
26683 5' -52.6 NC_005808.1 + 30528 0.76 0.271442
Target:  5'- --aGCGAAA-CGGCAGgacacCAUCGGCGCCa -3'
miRNA:   3'- cgaCGCUUUaGCUGUU-----GUGGCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.