Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26688 | 3' | -57.9 | NC_005808.1 | + | 17927 | 0.68 | 0.395223 |
Target: 5'- gUGGACguGGCCCGcGGCGGgCGCGaCa- -3' miRNA: 3'- -ACUUGguCUGGGU-CCGCUgGUGC-Gac -5' |
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26688 | 3' | -57.9 | NC_005808.1 | + | 23726 | 0.67 | 0.404443 |
Target: 5'- cGGGCCAGugCCucgguGGCGcgcagcagcGCCAUGCc- -3' miRNA: 3'- aCUUGGUCugGGu----CCGC---------UGGUGCGac -5' |
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26688 | 3' | -57.9 | NC_005808.1 | + | 13514 | 0.67 | 0.404443 |
Target: 5'- cGGGCCuGACCUcGGCGcccgaggaugACC-CGCUGa -3' miRNA: 3'- aCUUGGuCUGGGuCCGC----------UGGuGCGAC- -5' |
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26688 | 3' | -57.9 | NC_005808.1 | + | 24272 | 0.67 | 0.404443 |
Target: 5'- uUGAGCguGGCgCCGGacaGUGACCACGUg- -3' miRNA: 3'- -ACUUGguCUG-GGUC---CGCUGGUGCGac -5' |
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26688 | 3' | -57.9 | NC_005808.1 | + | 23521 | 0.67 | 0.413797 |
Target: 5'- cGAGCgCGccuUCCAGGCGGCgCACGCg- -3' miRNA: 3'- aCUUG-GUcu-GGGUCCGCUG-GUGCGac -5' |
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26688 | 3' | -57.9 | NC_005808.1 | + | 36678 | 0.67 | 0.413797 |
Target: 5'- aUGAcaACCAGGacuccaauCCC-GGCGgcacacucACCACGCUGg -3' miRNA: 3'- -ACU--UGGUCU--------GGGuCCGC--------UGGUGCGAC- -5' |
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26688 | 3' | -57.9 | NC_005808.1 | + | 23529 | 0.67 | 0.413797 |
Target: 5'- --cGCguGACCUcGGCGAggaCACGCUGa -3' miRNA: 3'- acuUGguCUGGGuCCGCUg--GUGCGAC- -5' |
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26688 | 3' | -57.9 | NC_005808.1 | + | 26086 | 0.67 | 0.413797 |
Target: 5'- -cGGCCAGACCaccGGC-ACCuCGCUGg -3' miRNA: 3'- acUUGGUCUGGgu-CCGcUGGuGCGAC- -5' |
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26688 | 3' | -57.9 | NC_005808.1 | + | 29901 | 0.67 | 0.42233 |
Target: 5'- uUGAacaGCCAGGCUaucaAGGCGggccucgacacgcGCCGCGCa- -3' miRNA: 3'- -ACU---UGGUCUGGg---UCCGC-------------UGGUGCGac -5' |
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26688 | 3' | -57.9 | NC_005808.1 | + | 27430 | 0.67 | 0.423284 |
Target: 5'- cGcACCGcGCCC-GGCGGCCgcaggcccugGCGCUGg -3' miRNA: 3'- aCuUGGUcUGGGuCCGCUGG----------UGCGAC- -5' |
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26688 | 3' | -57.9 | NC_005808.1 | + | 5133 | 0.67 | 0.423284 |
Target: 5'- uUGAACUgcaacGugCCgcgcAGGCGGCCGuCGCUGc -3' miRNA: 3'- -ACUUGGu----CugGG----UCCGCUGGU-GCGAC- -5' |
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26688 | 3' | -57.9 | NC_005808.1 | + | 8261 | 0.67 | 0.431933 |
Target: 5'- gGAAUCA--UCCGGGCauucggcuuccagGGCCACGCUGc -3' miRNA: 3'- aCUUGGUcuGGGUCCG-------------CUGGUGCGAC- -5' |
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26688 | 3' | -57.9 | NC_005808.1 | + | 8685 | 0.67 | 0.452506 |
Target: 5'- cUGcGCC--GCCCAGGUGugcGCCGCGCa- -3' miRNA: 3'- -ACuUGGucUGGGUCCGC---UGGUGCGac -5' |
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26688 | 3' | -57.9 | NC_005808.1 | + | 23801 | 0.66 | 0.461486 |
Target: 5'- --cGCCAGAUcaCCAacaagguGGCGGCCucgACGCUGa -3' miRNA: 3'- acuUGGUCUG--GGU-------CCGCUGG---UGCGAC- -5' |
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26688 | 3' | -57.9 | NC_005808.1 | + | 37500 | 0.66 | 0.46249 |
Target: 5'- cGcACCGGACgCUGGGcCGGCCGC-CUGu -3' miRNA: 3'- aCuUGGUCUG-GGUCC-GCUGGUGcGAC- -5' |
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26688 | 3' | -57.9 | NC_005808.1 | + | 28241 | 0.66 | 0.46249 |
Target: 5'- cGggUCGGACugcgCCAGGCucACCAUGUUGc -3' miRNA: 3'- aCuuGGUCUG----GGUCCGc-UGGUGCGAC- -5' |
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26688 | 3' | -57.9 | NC_005808.1 | + | 17104 | 0.66 | 0.46249 |
Target: 5'- -cGGCCGGGCCUugGGGCuuGACCACGa-- -3' miRNA: 3'- acUUGGUCUGGG--UCCG--CUGGUGCgac -5' |
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26688 | 3' | -57.9 | NC_005808.1 | + | 3862 | 0.66 | 0.46249 |
Target: 5'- uUGuACCAGGCgCCGucgcuGuaGGCCGCGCUGc -3' miRNA: 3'- -ACuUGGUCUG-GGU-----CcgCUGGUGCGAC- -5' |
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26688 | 3' | -57.9 | NC_005808.1 | + | 8521 | 0.66 | 0.46249 |
Target: 5'- gUGGGCCGuGGCgUAGGCGAUgaaACGCUc -3' miRNA: 3'- -ACUUGGU-CUGgGUCCGCUGg--UGCGAc -5' |
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26688 | 3' | -57.9 | NC_005808.1 | + | 29455 | 0.66 | 0.472587 |
Target: 5'- gUGcuCCuGGCaCCAGGCGACgaaGCGCg- -3' miRNA: 3'- -ACuuGGuCUG-GGUCCGCUGg--UGCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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