Results 21 - 40 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26688 | 3' | -57.9 | NC_005808.1 | + | 17510 | 0.68 | 0.35973 |
Target: 5'- ---cCCAcGGCgCCGGGCGcGCUGCGCUGg -3' miRNA: 3'- acuuGGU-CUG-GGUCCGC-UGGUGCGAC- -5' |
|||||||
26688 | 3' | -57.9 | NC_005808.1 | + | 17927 | 0.68 | 0.395223 |
Target: 5'- gUGGACguGGCCCGcGGCGGgCGCGaCa- -3' miRNA: 3'- -ACUUGguCUGGGU-CCGCUgGUGC-Gac -5' |
|||||||
26688 | 3' | -57.9 | NC_005808.1 | + | 19795 | 0.69 | 0.326524 |
Target: 5'- cGGGCCAG-UCC-GGC-ACCAUGCUGa -3' miRNA: 3'- aCUUGGUCuGGGuCCGcUGGUGCGAC- -5' |
|||||||
26688 | 3' | -57.9 | NC_005808.1 | + | 20818 | 0.69 | 0.342007 |
Target: 5'- aGAACCAggacaucagcaccGugCCGGGCGGCCuguccuauguggACGCg- -3' miRNA: 3'- aCUUGGU-------------CugGGUCCGCUGG------------UGCGac -5' |
|||||||
26688 | 3' | -57.9 | NC_005808.1 | + | 21449 | 0.7 | 0.267088 |
Target: 5'- uUGAACCAGGgCgCGgacacGGCGGCCAaGCUGg -3' miRNA: 3'- -ACUUGGUCUgG-GU-----CCGCUGGUgCGAC- -5' |
|||||||
26688 | 3' | -57.9 | NC_005808.1 | + | 23303 | 1.08 | 0.000453 |
Target: 5'- aUGAACCAGACCCAGGCGACCACGCUGu -3' miRNA: 3'- -ACUUGGUCUGGGUCCGCUGGUGCGAC- -5' |
|||||||
26688 | 3' | -57.9 | NC_005808.1 | + | 23521 | 0.67 | 0.413797 |
Target: 5'- cGAGCgCGccuUCCAGGCGGCgCACGCg- -3' miRNA: 3'- aCUUG-GUcu-GGGUCCGCUG-GUGCGac -5' |
|||||||
26688 | 3' | -57.9 | NC_005808.1 | + | 23529 | 0.67 | 0.413797 |
Target: 5'- --cGCguGACCUcGGCGAggaCACGCUGa -3' miRNA: 3'- acuUGguCUGGGuCCGCUg--GUGCGAC- -5' |
|||||||
26688 | 3' | -57.9 | NC_005808.1 | + | 23726 | 0.67 | 0.404443 |
Target: 5'- cGGGCCAGugCCucgguGGCGcgcagcagcGCCAUGCc- -3' miRNA: 3'- aCUUGGUCugGGu----CCGC---------UGGUGCGac -5' |
|||||||
26688 | 3' | -57.9 | NC_005808.1 | + | 23801 | 0.66 | 0.461486 |
Target: 5'- --cGCCAGAUcaCCAacaagguGGCGGCCucgACGCUGa -3' miRNA: 3'- acuUGGUCUG--GGU-------CCGCUGG---UGCGAC- -5' |
|||||||
26688 | 3' | -57.9 | NC_005808.1 | + | 24272 | 0.67 | 0.404443 |
Target: 5'- uUGAGCguGGCgCCGGacaGUGACCACGUg- -3' miRNA: 3'- -ACUUGguCUG-GGUC---CGCUGGUGCGac -5' |
|||||||
26688 | 3' | -57.9 | NC_005808.1 | + | 25134 | 0.66 | 0.493108 |
Target: 5'- -cGugCAGGCCCuGGCGuggcACCugGCc- -3' miRNA: 3'- acUugGUCUGGGuCCGC----UGGugCGac -5' |
|||||||
26688 | 3' | -57.9 | NC_005808.1 | + | 26086 | 0.67 | 0.413797 |
Target: 5'- -cGGCCAGACCaccGGC-ACCuCGCUGg -3' miRNA: 3'- acUUGGUCUGGgu-CCGcUGGuGCGAC- -5' |
|||||||
26688 | 3' | -57.9 | NC_005808.1 | + | 26317 | 0.72 | 0.194708 |
Target: 5'- -cGACCGGGuagccuUCCGGGUGGCCGCGCg- -3' miRNA: 3'- acUUGGUCU------GGGUCCGCUGGUGCGac -5' |
|||||||
26688 | 3' | -57.9 | NC_005808.1 | + | 27430 | 0.67 | 0.423284 |
Target: 5'- cGcACCGcGCCC-GGCGGCCgcaggcccugGCGCUGg -3' miRNA: 3'- aCuUGGUcUGGGuCCGCUGG----------UGCGAC- -5' |
|||||||
26688 | 3' | -57.9 | NC_005808.1 | + | 28241 | 0.66 | 0.46249 |
Target: 5'- cGggUCGGACugcgCCAGGCucACCAUGUUGc -3' miRNA: 3'- aCuuGGUCUG----GGUCCGc-UGGUGCGAC- -5' |
|||||||
26688 | 3' | -57.9 | NC_005808.1 | + | 29010 | 0.66 | 0.493108 |
Target: 5'- cGAcgUAGGCgaCCAGGCG-CCGCGCUu -3' miRNA: 3'- aCUugGUCUG--GGUCCGCuGGUGCGAc -5' |
|||||||
26688 | 3' | -57.9 | NC_005808.1 | + | 29455 | 0.66 | 0.472587 |
Target: 5'- gUGcuCCuGGCaCCAGGCGACgaaGCGCg- -3' miRNA: 3'- -ACuuGGuCUG-GGUCCGCUGg--UGCGac -5' |
|||||||
26688 | 3' | -57.9 | NC_005808.1 | + | 29901 | 0.67 | 0.42233 |
Target: 5'- uUGAacaGCCAGGCUaucaAGGCGggccucgacacgcGCCGCGCa- -3' miRNA: 3'- -ACU---UGGUCUGGg---UCCGC-------------UGGUGCGac -5' |
|||||||
26688 | 3' | -57.9 | NC_005808.1 | + | 30571 | 0.68 | 0.395223 |
Target: 5'- cUGGGCaAGACCUcgccGGCcacGGCCGCGCUGc -3' miRNA: 3'- -ACUUGgUCUGGGu---CCG---CUGGUGCGAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home