miRNA display CGI


Results 21 - 40 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26688 3' -57.9 NC_005808.1 + 23726 0.67 0.404443
Target:  5'- cGGGCCAGugCCucgguGGCGcgcagcagcGCCAUGCc- -3'
miRNA:   3'- aCUUGGUCugGGu----CCGC---------UGGUGCGac -5'
26688 3' -57.9 NC_005808.1 + 23529 0.67 0.413797
Target:  5'- --cGCguGACCUcGGCGAggaCACGCUGa -3'
miRNA:   3'- acuUGguCUGGGuCCGCUg--GUGCGAC- -5'
26688 3' -57.9 NC_005808.1 + 23521 0.67 0.413797
Target:  5'- cGAGCgCGccuUCCAGGCGGCgCACGCg- -3'
miRNA:   3'- aCUUG-GUcu-GGGUCCGCUG-GUGCGac -5'
26688 3' -57.9 NC_005808.1 + 23303 1.08 0.000453
Target:  5'- aUGAACCAGACCCAGGCGACCACGCUGu -3'
miRNA:   3'- -ACUUGGUCUGGGUCCGCUGGUGCGAC- -5'
26688 3' -57.9 NC_005808.1 + 21449 0.7 0.267088
Target:  5'- uUGAACCAGGgCgCGgacacGGCGGCCAaGCUGg -3'
miRNA:   3'- -ACUUGGUCUgG-GU-----CCGCUGGUgCGAC- -5'
26688 3' -57.9 NC_005808.1 + 20818 0.69 0.342007
Target:  5'- aGAACCAggacaucagcaccGugCCGGGCGGCCuguccuauguggACGCg- -3'
miRNA:   3'- aCUUGGU-------------CugGGUCCGCUGG------------UGCGac -5'
26688 3' -57.9 NC_005808.1 + 19795 0.69 0.326524
Target:  5'- cGGGCCAG-UCC-GGC-ACCAUGCUGa -3'
miRNA:   3'- aCUUGGUCuGGGuCCGcUGGUGCGAC- -5'
26688 3' -57.9 NC_005808.1 + 17927 0.68 0.395223
Target:  5'- gUGGACguGGCCCGcGGCGGgCGCGaCa- -3'
miRNA:   3'- -ACUUGguCUGGGU-CCGCUgGUGC-Gac -5'
26688 3' -57.9 NC_005808.1 + 17510 0.68 0.35973
Target:  5'- ---cCCAcGGCgCCGGGCGcGCUGCGCUGg -3'
miRNA:   3'- acuuGGU-CUG-GGUCCGC-UGGUGCGAC- -5'
26688 3' -57.9 NC_005808.1 + 17104 0.66 0.46249
Target:  5'- -cGGCCGGGCCUugGGGCuuGACCACGa-- -3'
miRNA:   3'- acUUGGUCUGGG--UCCG--CUGGUGCgac -5'
26688 3' -57.9 NC_005808.1 + 16969 0.66 0.503521
Target:  5'- cGAGgUGGACgCGcugcuGGCGACCGCGCc- -3'
miRNA:   3'- aCUUgGUCUGgGU-----CCGCUGGUGCGac -5'
26688 3' -57.9 NC_005808.1 + 16792 0.68 0.363177
Target:  5'- aUGGucGCCAGuugccaguuggucgcGCCCAGGCGGCgcaguuCACGCg- -3'
miRNA:   3'- -ACU--UGGUC---------------UGGGUCCGCUG------GUGCGac -5'
26688 3' -57.9 NC_005808.1 + 16581 0.68 0.377195
Target:  5'- cGAcgcGCCGGA-CgAGGcCGACCACGCg- -3'
miRNA:   3'- aCU---UGGUCUgGgUCC-GCUGGUGCGac -5'
26688 3' -57.9 NC_005808.1 + 13514 0.67 0.404443
Target:  5'- cGGGCCuGACCUcGGCGcccgaggaugACC-CGCUGa -3'
miRNA:   3'- aCUUGGuCUGGGuCCGC----------UGGuGCGAC- -5'
26688 3' -57.9 NC_005808.1 + 11014 0.73 0.179514
Target:  5'- aGAAgCAGGCCCAGGCGAgCA-GCc- -3'
miRNA:   3'- aCUUgGUCUGGGUCCGCUgGUgCGac -5'
26688 3' -57.9 NC_005808.1 + 10234 0.66 0.503521
Target:  5'- -cGGCCGGGgCCucggcGGCGACCGCaGCg- -3'
miRNA:   3'- acUUGGUCUgGGu----CCGCUGGUG-CGac -5'
26688 3' -57.9 NC_005808.1 + 8685 0.67 0.452506
Target:  5'- cUGcGCC--GCCCAGGUGugcGCCGCGCa- -3'
miRNA:   3'- -ACuUGGucUGGGUCCGC---UGGUGCGac -5'
26688 3' -57.9 NC_005808.1 + 8533 0.7 0.295646
Target:  5'- cGAACUu-GCCCAGGUaucgcaGGCCGCGCUc -3'
miRNA:   3'- aCUUGGucUGGGUCCG------CUGGUGCGAc -5'
26688 3' -57.9 NC_005808.1 + 8521 0.66 0.46249
Target:  5'- gUGGGCCGuGGCgUAGGCGAUgaaACGCUc -3'
miRNA:   3'- -ACUUGGU-CUGgGUCCGCUGg--UGCGAc -5'
26688 3' -57.9 NC_005808.1 + 8261 0.67 0.431933
Target:  5'- gGAAUCA--UCCGGGCauucggcuuccagGGCCACGCUGc -3'
miRNA:   3'- aCUUGGUcuGGGUCCG-------------CUGGUGCGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.