Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 26688 | 3' | -57.9 | NC_005808.1 | + | 7691 | 0.66 | 0.493108 |
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Target: 5'- cGGGCUuGACCUcGGCGGCCG-GCUu -3' miRNA: 3'- aCUUGGuCUGGGuCCGCUGGUgCGAc -5' |
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| 26688 | 3' | -57.9 | NC_005808.1 | + | 7168 | 0.66 | 0.482795 |
|
Target: 5'- aGGGCCGGGCgcuugucggauUCGGG-GGCgACGCUGg -3' miRNA: 3'- aCUUGGUCUG-----------GGUCCgCUGgUGCGAC- -5' |
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| 26688 | 3' | -57.9 | NC_005808.1 | + | 5133 | 0.67 | 0.423284 |
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Target: 5'- uUGAACUgcaacGugCCgcgcAGGCGGCCGuCGCUGc -3' miRNA: 3'- -ACUUGGu----CugGG----UCCGCUGGU-GCGAC- -5' |
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| 26688 | 3' | -57.9 | NC_005808.1 | + | 3862 | 0.66 | 0.46249 |
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Target: 5'- uUGuACCAGGCgCCGucgcuGuaGGCCGCGCUGc -3' miRNA: 3'- -ACuUGGUCUG-GGU-----CcgCUGGUGCGAC- -5' |
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| 26688 | 3' | -57.9 | NC_005808.1 | + | 2821 | 0.69 | 0.334608 |
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Target: 5'- cGGGCCAGGUgCucGCGGCCACGCg- -3' miRNA: 3'- aCUUGGUCUGgGucCGCUGGUGCGac -5' |
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| 26688 | 3' | -57.9 | NC_005808.1 | + | 2725 | 0.66 | 0.503521 |
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Target: 5'- -uGGCCGGACgCUugAGcGCGGCCcgGCGCUGc -3' miRNA: 3'- acUUGGUCUG-GG--UC-CGCUGG--UGCGAC- -5' |
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| 26688 | 3' | -57.9 | NC_005808.1 | + | 2659 | 0.68 | 0.368392 |
|
Target: 5'- aGGGCCAGcggucGCCCAGGUGuucgaucaGCCACGg-- -3' miRNA: 3'- aCUUGGUC-----UGGGUCCGC--------UGGUGCgac -5' |
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| 26688 | 3' | -57.9 | NC_005808.1 | + | 2569 | 0.66 | 0.472587 |
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Target: 5'- -cGACaCGG-CCCAGcGCGugCGCGCg- -3' miRNA: 3'- acUUG-GUCuGGGUC-CGCugGUGCGac -5' |
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| 26688 | 3' | -57.9 | NC_005808.1 | + | 2001 | 0.68 | 0.38614 |
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Target: 5'- cUGAuCUugAGGCCCAGGCG-CU-CGCUGg -3' miRNA: 3'- -ACUuGG--UCUGGGUCCGCuGGuGCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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