Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 26688 | 3' | -57.9 | NC_005808.1 | + | 2821 | 0.69 | 0.334608 |
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Target: 5'- cGGGCCAGGUgCucGCGGCCACGCg- -3' miRNA: 3'- aCUUGGUCUGgGucCGCUGGUGCGac -5' |
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| 26688 | 3' | -57.9 | NC_005808.1 | + | 21449 | 0.7 | 0.267088 |
|
Target: 5'- uUGAACCAGGgCgCGgacacGGCGGCCAaGCUGg -3' miRNA: 3'- -ACUUGGUCUgG-GU-----CCGCUGGUgCGAC- -5' |
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| 26688 | 3' | -57.9 | NC_005808.1 | + | 8533 | 0.7 | 0.295646 |
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Target: 5'- cGAACUu-GCCCAGGUaucgcaGGCCGCGCUc -3' miRNA: 3'- aCUUGGucUGGGUCCG------CUGGUGCGAc -5' |
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| 26688 | 3' | -57.9 | NC_005808.1 | + | 39744 | 0.71 | 0.24588 |
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Target: 5'- cGAACCAGGCCCcucgcuggugcuGGCGccGCUGCGCg- -3' miRNA: 3'- aCUUGGUCUGGGu-----------CCGC--UGGUGCGac -5' |
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| 26688 | 3' | -57.9 | NC_005808.1 | + | 26317 | 0.72 | 0.194708 |
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Target: 5'- -cGACCGGGuagccuUCCGGGUGGCCGCGCg- -3' miRNA: 3'- acUUGGUCU------GGGUCCGCUGGUGCGac -5' |
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| 26688 | 3' | -57.9 | NC_005808.1 | + | 11014 | 0.73 | 0.179514 |
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Target: 5'- aGAAgCAGGCCCAGGCGAgCA-GCc- -3' miRNA: 3'- aCUUgGUCUGGGUCCGCUgGUgCGac -5' |
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| 26688 | 3' | -57.9 | NC_005808.1 | + | 37239 | 0.74 | 0.160896 |
|
Target: 5'- cUGGGCgCGGugC-AGGCGGCCACGCa- -3' miRNA: 3'- -ACUUG-GUCugGgUCCGCUGGUGCGac -5' |
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| 26688 | 3' | -57.9 | NC_005808.1 | + | 41608 | 0.74 | 0.148094 |
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Target: 5'- gUGAACCAcGGCaccggCCAGGCGGCCAagugGCUGc -3' miRNA: 3'- -ACUUGGU-CUG-----GGUCCGCUGGUg---CGAC- -5' |
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| 26688 | 3' | -57.9 | NC_005808.1 | + | 23303 | 1.08 | 0.000453 |
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Target: 5'- aUGAACCAGACCCAGGCGACCACGCUGu -3' miRNA: 3'- -ACUUGGUCUGGGUCCGCUGGUGCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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