miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26689 3' -46 NC_005808.1 + 13865 0.68 0.970113
Target:  5'- uGGACGAuGCCAagGCGcucAUCCUCG-CGu -3'
miRNA:   3'- -CUUGCUuUGGU--UGCuu-UAGGAGCuGC- -5'
26689 3' -46 NC_005808.1 + 34351 0.69 0.962793
Target:  5'- cGGAUGAuuCCAGCGAcuUCgC-CGACGa -3'
miRNA:   3'- -CUUGCUuuGGUUGCUuuAG-GaGCUGC- -5'
26689 3' -46 NC_005808.1 + 32774 0.69 0.962793
Target:  5'- ---aGAAGgCGGCGAAGUCCgcccUCGGCa -3'
miRNA:   3'- cuugCUUUgGUUGCUUUAGG----AGCUGc -5'
26689 3' -46 NC_005808.1 + 37070 0.69 0.962793
Target:  5'- uGGGCGGAaccugggcgGCCGGCGu-GUCCUaCGACu -3'
miRNA:   3'- -CUUGCUU---------UGGUUGCuuUAGGA-GCUGc -5'
26689 3' -46 NC_005808.1 + 1718 0.69 0.9587
Target:  5'- cGGCGu-GCCGGCGAgggcguccaAGUCCUCG-CGg -3'
miRNA:   3'- cUUGCuuUGGUUGCU---------UUAGGAGCuGC- -5'
26689 3' -46 NC_005808.1 + 30044 0.69 0.954309
Target:  5'- -cGCGAGGCCGGCaaGAAAUUCacCGACGc -3'
miRNA:   3'- cuUGCUUUGGUUG--CUUUAGGa-GCUGC- -5'
26689 3' -46 NC_005808.1 + 22146 0.69 0.954309
Target:  5'- cGAAgGGAACCGgaACGAGggCCUgCGGCu -3'
miRNA:   3'- -CUUgCUUUGGU--UGCUUuaGGA-GCUGc -5'
26689 3' -46 NC_005808.1 + 31984 0.69 0.949613
Target:  5'- -cGCGAAcucgacGCCAgcguccuguGCGAAAcCCUCGACa -3'
miRNA:   3'- cuUGCUU------UGGU---------UGCUUUaGGAGCUGc -5'
26689 3' -46 NC_005808.1 + 14554 0.7 0.939283
Target:  5'- aGAcCGucGCCGACGuguUCUUCGGCGa -3'
miRNA:   3'- -CUuGCuuUGGUUGCuuuAGGAGCUGC- -5'
26689 3' -46 NC_005808.1 + 29333 0.7 0.933644
Target:  5'- uGGCGGucGCCGGCcAAGUCCUCGAa- -3'
miRNA:   3'- cUUGCUu-UGGUUGcUUUAGGAGCUgc -5'
26689 3' -46 NC_005808.1 + 40584 0.7 0.933644
Target:  5'- -cGCGAcuucGCCAGCGAGcgCCUgGGCc -3'
miRNA:   3'- cuUGCUu---UGGUUGCUUuaGGAgCUGc -5'
26689 3' -46 NC_005808.1 + 26010 0.7 0.927683
Target:  5'- uGGCGAuuUCGAgGGcuUCCUCGGCGa -3'
miRNA:   3'- cUUGCUuuGGUUgCUuuAGGAGCUGC- -5'
26689 3' -46 NC_005808.1 + 38481 0.71 0.900648
Target:  5'- --cCGAAGCCGACGA---CCgCGACGa -3'
miRNA:   3'- cuuGCUUUGGUUGCUuuaGGaGCUGC- -5'
26689 3' -46 NC_005808.1 + 24770 0.71 0.893101
Target:  5'- gGAAUGAccuGCC-ACGGGucGUCCUCGAUGc -3'
miRNA:   3'- -CUUGCUu--UGGuUGCUU--UAGGAGCUGC- -5'
26689 3' -46 NC_005808.1 + 18232 0.72 0.868647
Target:  5'- uGGCGAAugC-GCGAAGcCCUCGACc -3'
miRNA:   3'- cUUGCUUugGuUGCUUUaGGAGCUGc -5'
26689 3' -46 NC_005808.1 + 12255 0.73 0.841634
Target:  5'- cGAACG-GAUCGGCGGuaguGUCCUgGGCGg -3'
miRNA:   3'- -CUUGCuUUGGUUGCUu---UAGGAgCUGC- -5'
26689 3' -46 NC_005808.1 + 35576 0.74 0.75928
Target:  5'- -cGCGAGAUCAACGccAAGUCCUCGuucaugGCGa -3'
miRNA:   3'- cuUGCUUUGGUUGC--UUUAGGAGC------UGC- -5'
26689 3' -46 NC_005808.1 + 28910 0.78 0.561111
Target:  5'- aGAugGAcGCCGACGAcAUCCUC-ACGg -3'
miRNA:   3'- -CUugCUuUGGUUGCUuUAGGAGcUGC- -5'
26689 3' -46 NC_005808.1 + 17083 0.82 0.360125
Target:  5'- aGGCGAAGCCGGCGcgGUUCUCGGCc -3'
miRNA:   3'- cUUGCUUUGGUUGCuuUAGGAGCUGc -5'
26689 3' -46 NC_005808.1 + 21079 0.89 0.142886
Target:  5'- uGAACGGAugCAcaACGAAAUCCUCGACc -3'
miRNA:   3'- -CUUGCUUugGU--UGCUUUAGGAGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.