miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26690 3' -53.5 NC_005808.1 + 41880 0.75 0.250642
Target:  5'- cGGCAAAGCCGccccuauCCUGGGCGGUaucuugggCGCCCg -3'
miRNA:   3'- -UUGUUUUGGCc------GGACCCGUUA--------GUGGG- -5'
26690 3' -53.5 NC_005808.1 + 41507 0.67 0.645954
Target:  5'- cGCGcGACaCGGCCaaGGCAAUCuACCg -3'
miRNA:   3'- uUGUuUUG-GCCGGacCCGUUAG-UGGg -5'
26690 3' -53.5 NC_005808.1 + 41286 0.69 0.521178
Target:  5'- ------gUCGGCCUGguGGCcGUCGCCCu -3'
miRNA:   3'- uuguuuuGGCCGGAC--CCGuUAGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 40174 0.7 0.467384
Target:  5'- -uCGAGGCCGGCCUGcuGCcGUaCACCUa -3'
miRNA:   3'- uuGUUUUGGCCGGACc-CGuUA-GUGGG- -5'
26690 3' -53.5 NC_005808.1 + 39669 0.66 0.699559
Target:  5'- cGACGcgguguGGGCCGGCaugggaaUGGGCAAgacgguuuccgcgcUCACCg -3'
miRNA:   3'- -UUGU------UUUGGCCGg------ACCCGUU--------------AGUGGg -5'
26690 3' -53.5 NC_005808.1 + 38516 0.67 0.634468
Target:  5'- cACcuGGCCGGCCUGauGGCuaccAAUCcCCCc -3'
miRNA:   3'- uUGuuUUGGCCGGAC--CCG----UUAGuGGG- -5'
26690 3' -53.5 NC_005808.1 + 37716 0.69 0.532235
Target:  5'- aAACGAGGCCGccgucgccGCgCUGGGCAAcgACCUg -3'
miRNA:   3'- -UUGUUUUGGC--------CG-GACCCGUUagUGGG- -5'
26690 3' -53.5 NC_005808.1 + 36427 0.66 0.702941
Target:  5'- cGGCAAGACCGGCCUGcGCugggaaGAUgACg- -3'
miRNA:   3'- -UUGUUUUGGCCGGACcCG------UUAgUGgg -5'
26690 3' -53.5 NC_005808.1 + 35437 0.67 0.642509
Target:  5'- cAGCGcguCgGGCCUGGGCuucaacgucaugagCGCCCu -3'
miRNA:   3'- -UUGUuuuGgCCGGACCCGuua-----------GUGGG- -5'
26690 3' -53.5 NC_005808.1 + 34954 0.77 0.174901
Target:  5'- cGGCAagGAGCCGGCgUGGGuCGAgccgCGCCCc -3'
miRNA:   3'- -UUGU--UUUGGCCGgACCC-GUUa---GUGGG- -5'
26690 3' -53.5 NC_005808.1 + 34058 0.66 0.714163
Target:  5'- ---cGAGCgCGGCCugcgauaccUGGGCAAguUCGCCg -3'
miRNA:   3'- uuguUUUG-GCCGG---------ACCCGUU--AGUGGg -5'
26690 3' -53.5 NC_005808.1 + 32010 0.66 0.714163
Target:  5'- uGCAGGcugCGcGCCUGGGUAcuaCGCCCg -3'
miRNA:   3'- uUGUUUug-GC-CGGACCCGUua-GUGGG- -5'
26690 3' -53.5 NC_005808.1 + 31684 0.67 0.622979
Target:  5'- uGC-AAACCGGC--GGGCAGgUCGCCa -3'
miRNA:   3'- uUGuUUUGGCCGgaCCCGUU-AGUGGg -5'
26690 3' -53.5 NC_005808.1 + 31615 0.69 0.50694
Target:  5'- uGCAAu-CCGGCCUGGccgaacagguggccGCAGUguCCCc -3'
miRNA:   3'- uUGUUuuGGCCGGACC--------------CGUUAguGGG- -5'
26690 3' -53.5 NC_005808.1 + 31039 0.67 0.668875
Target:  5'- uGGCuucgauGACCGGC--GGGCAGUCcuaucaggauGCCCg -3'
miRNA:   3'- -UUGuu----UUGGCCGgaCCCGUUAG----------UGGG- -5'
26690 3' -53.5 NC_005808.1 + 31023 0.71 0.387788
Target:  5'- gGGCuu-GCCGGCC-GaGGCAAUCGCgCg -3'
miRNA:   3'- -UUGuuuUGGCCGGaC-CCGUUAGUGgG- -5'
26690 3' -53.5 NC_005808.1 + 30738 0.66 0.725297
Target:  5'- gGGCGAuAUUGGCgCgGGGU--UCGCCCa -3'
miRNA:   3'- -UUGUUuUGGCCG-GaCCCGuuAGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 30294 0.66 0.684835
Target:  5'- cAACGAAuucgacgccgccguaGCCGGCacgCUGGGCcagcaACCCg -3'
miRNA:   3'- -UUGUUU---------------UGGCCG---GACCCGuuag-UGGG- -5'
26690 3' -53.5 NC_005808.1 + 29930 0.66 0.702941
Target:  5'- cGACAcgcGCCGcGCaugaUGGGCGAcgACCCg -3'
miRNA:   3'- -UUGUuu-UGGC-CGg---ACCCGUUagUGGG- -5'
26690 3' -53.5 NC_005808.1 + 29412 0.68 0.554592
Target:  5'- uACAAcGCCGGCCaaGGGC----GCCCa -3'
miRNA:   3'- uUGUUuUGGCCGGa-CCCGuuagUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.