miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26693 5' -56 NC_005808.1 + 37452 0.69 0.397972
Target:  5'- aGCAGCGACGGCCG-CCUGcGcGGCAc- -3'
miRNA:   3'- -CGUCGUUGUCGGCuGGGU-CcUCGUuc -5'
26693 5' -56 NC_005808.1 + 11077 0.68 0.477094
Target:  5'- aCGGCAacACAGCgaGGCCCAGcAGCAc- -3'
miRNA:   3'- cGUCGU--UGUCGg-CUGGGUCcUCGUuc -5'
26693 5' -56 NC_005808.1 + 5085 0.68 0.425692
Target:  5'- uGCGGUuggaacaGGCGGCCGGCCCAgcguccGGuGCGGc -3'
miRNA:   3'- -CGUCG-------UUGUCGGCUGGGU------CCuCGUUc -5'
26693 5' -56 NC_005808.1 + 10247 0.68 0.426668
Target:  5'- gGCGGCGACcGCagCGACCUGGGcGGCGGu -3'
miRNA:   3'- -CGUCGUUGuCG--GCUGGGUCC-UCGUUc -5'
26693 5' -56 NC_005808.1 + 9408 0.68 0.456556
Target:  5'- cCAGCggUGGCCGugCCGaGGGCGc- -3'
miRNA:   3'- cGUCGuuGUCGGCugGGUcCUCGUuc -5'
26693 5' -56 NC_005808.1 + 27791 0.68 0.466767
Target:  5'- -aGGCAGC-GCCG-CCgAGGuGCAGGu -3'
miRNA:   3'- cgUCGUUGuCGGCuGGgUCCuCGUUC- -5'
26693 5' -56 NC_005808.1 + 29808 0.67 0.527039
Target:  5'- cGCAcCAGCcugucugaGGCCGAcuucaagcauuuuuCCCAGGAGCGc- -3'
miRNA:   3'- -CGUcGUUG--------UCGGCU--------------GGGUCCUCGUuc -5'
26693 5' -56 NC_005808.1 + 32444 0.67 0.516235
Target:  5'- gGCAGCGACuGCCccuacGCCCccuacugccgagguGGGGGCGGc -3'
miRNA:   3'- -CGUCGUUGuCGGc----UGGG--------------UCCUCGUUc -5'
26693 5' -56 NC_005808.1 + 6591 0.67 0.519467
Target:  5'- cCAGCA-CGGCCGGCaCCAcguaGAGCAu- -3'
miRNA:   3'- cGUCGUuGUCGGCUG-GGUc---CUCGUuc -5'
26693 5' -56 NC_005808.1 + 6921 0.67 0.52921
Target:  5'- -aGGCAuuGCGGCCGACCCAuuccuucGuGGCAGa -3'
miRNA:   3'- cgUCGU--UGUCGGCUGGGU-------CcUCGUUc -5'
26693 5' -56 NC_005808.1 + 10956 0.67 0.530297
Target:  5'- cGCGGCGACAGCCGGggacaCUGGGccaccuguucGGCcAGg -3'
miRNA:   3'- -CGUCGUUGUCGGCUg----GGUCC----------UCGuUC- -5'
26693 5' -56 NC_005808.1 + 21873 0.67 0.519467
Target:  5'- cCAGCAGCAuGUCGGCCUgauGGGGUg-- -3'
miRNA:   3'- cGUCGUUGU-CGGCUGGGu--CCUCGuuc -5'
26693 5' -56 NC_005808.1 + 33013 0.66 0.574353
Target:  5'- cCAGCGACAGCaucaCGAUgCUGGGcGGCAAGu -3'
miRNA:   3'- cGUCGUUGUCG----GCUG-GGUCC-UCGUUC- -5'
26693 5' -56 NC_005808.1 + 24562 0.66 0.574353
Target:  5'- cGCGGCGAUggcgaGGCCGGCCaCGGucGGGCc-- -3'
miRNA:   3'- -CGUCGUUG-----UCGGCUGG-GUC--CUCGuuc -5'
26693 5' -56 NC_005808.1 + 18829 0.66 0.596712
Target:  5'- cGUAGCcGCGGCgcauCGGCCCGGuGGCGc- -3'
miRNA:   3'- -CGUCGuUGUCG----GCUGGGUCcUCGUuc -5'
26693 5' -56 NC_005808.1 + 26830 0.66 0.585512
Target:  5'- gGCAgGCuGC-GCCGcCCCGauGGAGCGGGc -3'
miRNA:   3'- -CGU-CGuUGuCGGCuGGGU--CCUCGUUC- -5'
26693 5' -56 NC_005808.1 + 17095 0.66 0.596712
Target:  5'- cGCGGUucuCGGCCGGgCCuuGGGGCu-- -3'
miRNA:   3'- -CGUCGuu-GUCGGCUgGGu-CCUCGuuc -5'
26693 5' -56 NC_005808.1 + 33950 0.66 0.563244
Target:  5'- aCAGCGaguACGGCgCGGCCUGGG-GCGu- -3'
miRNA:   3'- cGUCGU---UGUCG-GCUGGGUCCuCGUuc -5'
26693 5' -56 NC_005808.1 + 5948 0.66 0.563244
Target:  5'- aGC-GCAACGGuguaguCCGuACCCAGGGuCAAGg -3'
miRNA:   3'- -CGuCGUUGUC------GGC-UGGGUCCUcGUUC- -5'
26693 5' -56 NC_005808.1 + 8234 0.66 0.585512
Target:  5'- gGCGGCcgucAGCAGCuugcgcuucaagCGGCCCAGGuGUucGa -3'
miRNA:   3'- -CGUCG----UUGUCG------------GCUGGGUCCuCGuuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.