miRNA display CGI


Results 21 - 40 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26693 5' -56 NC_005808.1 + 24562 0.66 0.574353
Target:  5'- cGCGGCGAUggcgaGGCCGGCCaCGGucGGGCc-- -3'
miRNA:   3'- -CGUCGUUG-----UCGGCUGG-GUC--CUCGuuc -5'
26693 5' -56 NC_005808.1 + 24076 0.66 0.552193
Target:  5'- aCAGUAGCGG-CGACCgCGcGGGGCAc- -3'
miRNA:   3'- cGUCGUUGUCgGCUGG-GU-CCUCGUuc -5'
26693 5' -56 NC_005808.1 + 23111 0.66 0.552193
Target:  5'- --cGCAGCGGCCuGCCCAccggcaccuGGcGCAAGc -3'
miRNA:   3'- cguCGUUGUCGGcUGGGU---------CCuCGUUC- -5'
26693 5' -56 NC_005808.1 + 22381 0.69 0.388686
Target:  5'- -aGGcCAACAGCCGGCCgCGGGcGCu-- -3'
miRNA:   3'- cgUC-GUUGUCGGCUGG-GUCCuCGuuc -5'
26693 5' -56 NC_005808.1 + 22347 1.11 0.000346
Target:  5'- aGCAGCAACAGCCGACCCAGGAGCAAGg -3'
miRNA:   3'- -CGUCGUUGUCGGCUGGGUCCUCGUUC- -5'
26693 5' -56 NC_005808.1 + 21873 0.67 0.519467
Target:  5'- cCAGCAGCAuGUCGGCCUgauGGGGUg-- -3'
miRNA:   3'- cGUCGUUGU-CGGCUGGGu--CCUCGuuc -5'
26693 5' -56 NC_005808.1 + 19597 0.72 0.253519
Target:  5'- cGCAGCAGCAgGCCGACCa---GGCGAa -3'
miRNA:   3'- -CGUCGUUGU-CGGCUGGguccUCGUUc -5'
26693 5' -56 NC_005808.1 + 18829 0.66 0.596712
Target:  5'- cGUAGCcGCGGCgcauCGGCCCGGuGGCGc- -3'
miRNA:   3'- -CGUCGuUGUCG----GCUGGGUCcUCGUuc -5'
26693 5' -56 NC_005808.1 + 18582 0.69 0.405503
Target:  5'- cGCGGUGACGGCCuGGCCguccgagacuuGGAGCAGu -3'
miRNA:   3'- -CGUCGUUGUCGG-CUGGgu---------CCUCGUUc -5'
26693 5' -56 NC_005808.1 + 17095 0.66 0.596712
Target:  5'- cGCGGUucuCGGCCGGgCCuuGGGGCu-- -3'
miRNA:   3'- -CGUCGuu-GUCGGCUgGGu-CCUCGuuc -5'
26693 5' -56 NC_005808.1 + 16643 0.75 0.178274
Target:  5'- uGguGCAGguGCCGGCCgacgaGGGAGCGGa -3'
miRNA:   3'- -CguCGUUguCGGCUGGg----UCCUCGUUc -5'
26693 5' -56 NC_005808.1 + 16322 0.66 0.596712
Target:  5'- cGCGcGCGAUgcgcgAGCCGACC-AGGccGGCGGGu -3'
miRNA:   3'- -CGU-CGUUG-----UCGGCUGGgUCC--UCGUUC- -5'
26693 5' -56 NC_005808.1 + 16224 0.66 0.574353
Target:  5'- -gAGCAGCAGCa-ACUCGGuGAGCGGc -3'
miRNA:   3'- cgUCGUUGUCGgcUGGGUC-CUCGUUc -5'
26693 5' -56 NC_005808.1 + 15532 0.69 0.416966
Target:  5'- cCAGCAGgGGCUGACgCCcuGAGCAu- -3'
miRNA:   3'- cGUCGUUgUCGGCUG-GGucCUCGUuc -5'
26693 5' -56 NC_005808.1 + 14760 0.72 0.246906
Target:  5'- aGCAGCGgcGCGGCCGGCgCCAccGcGGGCAGc -3'
miRNA:   3'- -CGUCGU--UGUCGGCUG-GGU--C-CUCGUUc -5'
26693 5' -56 NC_005808.1 + 13708 0.66 0.552193
Target:  5'- uCGGCGACGGCCagcaacuACgCCAGcAGCGAGg -3'
miRNA:   3'- cGUCGUUGUCGGc------UG-GGUCcUCGUUC- -5'
26693 5' -56 NC_005808.1 + 12011 0.71 0.296279
Target:  5'- uCGGcCAGCAGCgCGGCCguGGccGGCGAGg -3'
miRNA:   3'- cGUC-GUUGUCG-GCUGGguCC--UCGUUC- -5'
26693 5' -56 NC_005808.1 + 11418 0.66 0.574353
Target:  5'- aGCAGCGGCgAGCCGGCgugCAGGucGCc-- -3'
miRNA:   3'- -CGUCGUUG-UCGGCUGg--GUCCu-CGuuc -5'
26693 5' -56 NC_005808.1 + 11077 0.68 0.477094
Target:  5'- aCGGCAacACAGCgaGGCCCAGcAGCAc- -3'
miRNA:   3'- cGUCGU--UGUCGg-CUGGGUCcUCGUuc -5'
26693 5' -56 NC_005808.1 + 10998 0.69 0.406451
Target:  5'- aGCAGCAgguAgGGCCagaagcaGGCCCAGGcgAGCAGc -3'
miRNA:   3'- -CGUCGU---UgUCGG-------CUGGGUCC--UCGUUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.