Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26693 | 5' | -56 | NC_005808.1 | + | 29808 | 0.67 | 0.527039 |
Target: 5'- cGCAcCAGCcugucugaGGCCGAcuucaagcauuuuuCCCAGGAGCGc- -3' miRNA: 3'- -CGUcGUUG--------UCGGCU--------------GGGUCCUCGUuc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 28016 | 0.66 | 0.541207 |
Target: 5'- aGCGGau-CGGCCGccggcaucaGCCCgguAGGGGCGGGu -3' miRNA: 3'- -CGUCguuGUCGGC---------UGGG---UCCUCGUUC- -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 37979 | 0.66 | 0.584394 |
Target: 5'- gGCAGCGcgggccaacauugGCcuGGCUGACCUGGGcGGCAu- -3' miRNA: 3'- -CGUCGU-------------UG--UCGGCUGGGUCC-UCGUuc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 15532 | 0.69 | 0.416966 |
Target: 5'- cCAGCAGgGGCUGACgCCcuGAGCAu- -3' miRNA: 3'- cGUCGUUgUCGGCUG-GGucCUCGUuc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 35340 | 0.66 | 0.551091 |
Target: 5'- aGCAGCAguucaagaccuggGCGGCCGACaucgCCGaGGGUGAGc -3' miRNA: 3'- -CGUCGU-------------UGUCGGCUG----GGUcCUCGUUC- -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 23111 | 0.66 | 0.552193 |
Target: 5'- --cGCAGCGGCCuGCCCAccggcaccuGGcGCAAGc -3' miRNA: 3'- cguCGUUGUCGGcUGGGU---------CCuCGUUC- -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 16322 | 0.66 | 0.596712 |
Target: 5'- cGCGcGCGAUgcgcgAGCCGACC-AGGccGGCGGGu -3' miRNA: 3'- -CGU-CGUUG-----UCGGCUGGgUCC--UCGUUC- -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 21873 | 0.67 | 0.519467 |
Target: 5'- cCAGCAGCAuGUCGGCCUgauGGGGUg-- -3' miRNA: 3'- cGUCGUUGU-CGGCUGGGu--CCUCGuuc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 13708 | 0.66 | 0.552193 |
Target: 5'- uCGGCGACGGCCagcaacuACgCCAGcAGCGAGg -3' miRNA: 3'- cGUCGUUGUCGGc------UG-GGUCcUCGUUC- -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 41557 | 0.66 | 0.551091 |
Target: 5'- cGCGGCGACAugcugccGCCGGCCguGGccuucCAGGu -3' miRNA: 3'- -CGUCGUUGU-------CGGCUGGguCCuc---GUUC- -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 5948 | 0.66 | 0.563244 |
Target: 5'- aGC-GCAACGGuguaguCCGuACCCAGGGuCAAGg -3' miRNA: 3'- -CGuCGUUGUC------GGC-UGGGUCCUcGUUC- -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 10956 | 0.67 | 0.530297 |
Target: 5'- cGCGGCGACAGCCGGggacaCUGGGccaccuguucGGCcAGg -3' miRNA: 3'- -CGUCGUUGUCGGCUg----GGUCC----------UCGuUC- -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 12011 | 0.71 | 0.296279 |
Target: 5'- uCGGcCAGCAGCgCGGCCguGGccGGCGAGg -3' miRNA: 3'- cGUC-GUUGUCG-GCUGGguCC--UCGUUC- -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 26830 | 0.66 | 0.585512 |
Target: 5'- gGCAgGCuGC-GCCGcCCCGauGGAGCGGGc -3' miRNA: 3'- -CGU-CGuUGuCGGCuGGGU--CCUCGUUC- -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 17095 | 0.66 | 0.596712 |
Target: 5'- cGCGGUucuCGGCCGGgCCuuGGGGCu-- -3' miRNA: 3'- -CGUCGuu-GUCGGCUgGGu-CCUCGuuc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 37452 | 0.69 | 0.397972 |
Target: 5'- aGCAGCGACGGCCG-CCUGcGcGGCAc- -3' miRNA: 3'- -CGUCGUUGUCGGCuGGGU-CcUCGUuc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 6921 | 0.67 | 0.52921 |
Target: 5'- -aGGCAuuGCGGCCGACCCAuuccuucGuGGCAGa -3' miRNA: 3'- cgUCGU--UGUCGGCUGGGU-------CcUCGUUc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 37644 | 0.69 | 0.397972 |
Target: 5'- aGCAGCGcgauacGCGGCUGcaucguggcGCCCGaGGGCAAGa -3' miRNA: 3'- -CGUCGU------UGUCGGC---------UGGGUcCUCGUUC- -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 33950 | 0.66 | 0.563244 |
Target: 5'- aCAGCGaguACGGCgCGGCCUGGG-GCGu- -3' miRNA: 3'- cGUCGU---UGUCG-GCUGGGUCCuCGUuc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 8234 | 0.66 | 0.585512 |
Target: 5'- gGCGGCcgucAGCAGCuugcgcuucaagCGGCCCAGGuGUucGa -3' miRNA: 3'- -CGUCG----UUGUCG------------GCUGGGUCCuCGuuC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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