Results 1 - 20 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26696 | 5' | -61.7 | NC_005808.1 | + | 9203 | 0.66 | 0.328117 |
Target: 5'- gCC-UGCUCggcgGCGCGGcGCacguucugCGGCGCGCc -3' miRNA: 3'- aGGuACGAG----CGCGUC-CGg-------GUCGCGCG- -5' |
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26696 | 5' | -61.7 | NC_005808.1 | + | 35880 | 0.66 | 0.327332 |
Target: 5'- gCCGUGCUCaaGCAGaugcgcGCCCaggacaaGGUGUGCc -3' miRNA: 3'- aGGUACGAGcgCGUC------CGGG-------UCGCGCG- -5' |
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26696 | 5' | -61.7 | NC_005808.1 | + | 8238 | 0.66 | 0.320324 |
Target: 5'- gCCGUcagcaGCUUGCGCuucaagcGGCCCAG-GUGUu -3' miRNA: 3'- aGGUA-----CGAGCGCGu------CCGGGUCgCGCG- -5' |
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26696 | 5' | -61.7 | NC_005808.1 | + | 19173 | 0.66 | 0.320324 |
Target: 5'- aUCCcgGCcggCGuCGCAcugaCCGGCGCGCu -3' miRNA: 3'- -AGGuaCGa--GC-GCGUccg-GGUCGCGCG- -5' |
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26696 | 5' | -61.7 | NC_005808.1 | + | 28566 | 0.66 | 0.320324 |
Target: 5'- gCCAUcGCggCGCGCAcgucGGCcaCCGGCaGCGUg -3' miRNA: 3'- aGGUA-CGa-GCGCGU----CCG--GGUCG-CGCG- -5' |
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26696 | 5' | -61.7 | NC_005808.1 | + | 24785 | 0.66 | 0.320324 |
Target: 5'- cCCGaggGUUcCGUGCAGGCggaauaCuGCGCGCg -3' miRNA: 3'- aGGUa--CGA-GCGCGUCCGg-----GuCGCGCG- -5' |
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26696 | 5' | -61.7 | NC_005808.1 | + | 1878 | 0.66 | 0.31267 |
Target: 5'- cCCGUgGC-CgGCGCuGGCCgGGUGgGCg -3' miRNA: 3'- aGGUA-CGaG-CGCGuCCGGgUCGCgCG- -5' |
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26696 | 5' | -61.7 | NC_005808.1 | + | 20083 | 0.66 | 0.31267 |
Target: 5'- -gCGUGCUCGCuGCGGGgaugaUGGCGgGCa -3' miRNA: 3'- agGUACGAGCG-CGUCCgg---GUCGCgCG- -5' |
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26696 | 5' | -61.7 | NC_005808.1 | + | 13001 | 0.66 | 0.31267 |
Target: 5'- gCCGUuCUCGUaCAGGCCgcgCAGCGCa- -3' miRNA: 3'- aGGUAcGAGCGcGUCCGG---GUCGCGcg -5' |
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26696 | 5' | -61.7 | NC_005808.1 | + | 6693 | 0.66 | 0.31267 |
Target: 5'- gCCA---UCGUGCAGGCacaccuuguCCugGGCGCGCa -3' miRNA: 3'- aGGUacgAGCGCGUCCG---------GG--UCGCGCG- -5' |
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26696 | 5' | -61.7 | NC_005808.1 | + | 36844 | 0.66 | 0.305155 |
Target: 5'- gCC---CUgGCGCAcucgcuGCCCGGCGCGCu -3' miRNA: 3'- aGGuacGAgCGCGUc-----CGGGUCGCGCG- -5' |
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26696 | 5' | -61.7 | NC_005808.1 | + | 38189 | 0.66 | 0.29778 |
Target: 5'- aCCuacgacUGC-CGCacGCucaAGGCCCGGCGCGa -3' miRNA: 3'- aGGu-----ACGaGCG--CG---UCCGGGUCGCGCg -5' |
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26696 | 5' | -61.7 | NC_005808.1 | + | 23717 | 0.66 | 0.29778 |
Target: 5'- cCCA-GgUCGCGggcCAGuGCCUcgguGGCGCGCa -3' miRNA: 3'- aGGUaCgAGCGC---GUC-CGGG----UCGCGCG- -5' |
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26696 | 5' | -61.7 | NC_005808.1 | + | 9345 | 0.66 | 0.296322 |
Target: 5'- gCCGUGCcgcgauagccaGCGguGGCCguGC-CGCg -3' miRNA: 3'- aGGUACGag---------CGCguCCGGguCGcGCG- -5' |
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26696 | 5' | -61.7 | NC_005808.1 | + | 9009 | 0.66 | 0.296322 |
Target: 5'- gCCGUGCcggauucgccaGCGguGGCCguGC-CGCg -3' miRNA: 3'- aGGUACGag---------CGCguCCGGguCGcGCG- -5' |
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26696 | 5' | -61.7 | NC_005808.1 | + | 9249 | 0.66 | 0.296322 |
Target: 5'- gCCGUGCcgcgauagccaGCGguGGCCguGC-CGCg -3' miRNA: 3'- aGGUACGag---------CGCguCCGGguCGcGCG- -5' |
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26696 | 5' | -61.7 | NC_005808.1 | + | 9201 | 0.66 | 0.296322 |
Target: 5'- gCCGUGCcgcgauagccaGCGguGGCCguGC-CGCg -3' miRNA: 3'- aGGUACGag---------CGCguCCGGguCGcGCG- -5' |
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26696 | 5' | -61.7 | NC_005808.1 | + | 9057 | 0.66 | 0.296322 |
Target: 5'- gCCGUGCcggauucgccaGCGguGGCCguGC-CGCg -3' miRNA: 3'- aGGUACGag---------CGCguCCGGguCGcGCG- -5' |
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26696 | 5' | -61.7 | NC_005808.1 | + | 9105 | 0.66 | 0.296322 |
Target: 5'- gCCGUGCcgcgauagccaGCGguGGCCguGC-CGCg -3' miRNA: 3'- aGGUACGag---------CGCguCCGGguCGcGCG- -5' |
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26696 | 5' | -61.7 | NC_005808.1 | + | 9297 | 0.66 | 0.296322 |
Target: 5'- gCCGUGCcgcgauagccaGCGguGGCCguGC-CGCg -3' miRNA: 3'- aGGUACGag---------CGCguCCGGguCGcGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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