miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26696 5' -61.7 NC_005808.1 + 366 0.68 0.223919
Target:  5'- aUCCggguGUGCUUggccugccgauugaGCGC-GG-CCAGCGCGCg -3'
miRNA:   3'- -AGG----UACGAG--------------CGCGuCCgGGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 1048 0.66 0.290544
Target:  5'- gCCGUggcguauucGCUCGCGgAuuuccugugcGaCCCGGCGCGCg -3'
miRNA:   3'- aGGUA---------CGAGCGCgU----------CcGGGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 1103 0.72 0.117584
Target:  5'- gCCGUGUcgcgcggcaugUCGCGCAucGGCCCGGUguaaccguuagcucGCGCu -3'
miRNA:   3'- aGGUACG-----------AGCGCGU--CCGGGUCG--------------CGCG- -5'
26696 5' -61.7 NC_005808.1 + 1878 0.66 0.31267
Target:  5'- cCCGUgGC-CgGCGCuGGCCgGGUGgGCg -3'
miRNA:   3'- aGGUA-CGaG-CGCGuCCGGgUCGCgCG- -5'
26696 5' -61.7 NC_005808.1 + 2013 0.73 0.10524
Target:  5'- cCCAgGCgcucgcuggcgaagUCGCGCAGGCgauagaacaCGGCGCGCa -3'
miRNA:   3'- aGGUaCG--------------AGCGCGUCCGg--------GUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 2556 0.74 0.089742
Target:  5'- aCCuugGCaUGUGCGacacGGCCCAGCGCGUg -3'
miRNA:   3'- aGGua-CGaGCGCGU----CCGGGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 2727 0.73 0.106122
Target:  5'- gCCGgacGCUUgaGCGC-GGCCCGGCGCuGCu -3'
miRNA:   3'- aGGUa--CGAG--CGCGuCCGGGUCGCG-CG- -5'
26696 5' -61.7 NC_005808.1 + 2824 0.66 0.290544
Target:  5'- gCCAggUGCUCGCGgcCAcGCgCAGCgGCGCc -3'
miRNA:   3'- aGGU--ACGAGCGC--GUcCGgGUCG-CGCG- -5'
26696 5' -61.7 NC_005808.1 + 4032 0.78 0.044054
Target:  5'- gUCAUGC-CGCGCGGGUCgAGCGCaGCc -3'
miRNA:   3'- aGGUACGaGCGCGUCCGGgUCGCG-CG- -5'
26696 5' -61.7 NC_005808.1 + 4388 0.73 0.100372
Target:  5'- gCCAggcGCcgUCGCGcCGGGCCUugAGCGUGCg -3'
miRNA:   3'- aGGUa--CG--AGCGC-GUCCGGG--UCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 4663 0.68 0.243726
Target:  5'- -aCA-GgUUGUugGCGGGCaCCAGCGCGCc -3'
miRNA:   3'- agGUaCgAGCG--CGUCCG-GGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 5143 0.67 0.25001
Target:  5'- -aCGUGC-CGCGCAGGCggCCGuCGCuGCu -3'
miRNA:   3'- agGUACGaGCGCGUCCG--GGUcGCG-CG- -5'
26696 5' -61.7 NC_005808.1 + 5617 0.68 0.214259
Target:  5'- --gGUGCguuUCGCGCGuGGCgCGGCGCaGCu -3'
miRNA:   3'- aggUACG---AGCGCGU-CCGgGUCGCG-CG- -5'
26696 5' -61.7 NC_005808.1 + 5732 0.67 0.276487
Target:  5'- --gAUG-UCGCaCAGaucGCCCAGCGCGCc -3'
miRNA:   3'- aggUACgAGCGcGUC---CGGGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 6482 0.71 0.13235
Target:  5'- -gCAcGC-CGCGCAGGCCCGcauucaCGCGCu -3'
miRNA:   3'- agGUaCGaGCGCGUCCGGGUc-----GCGCG- -5'
26696 5' -61.7 NC_005808.1 + 6619 0.69 0.192934
Target:  5'- aCCA-GCggGCGCGuGGCgCuGCGCGCg -3'
miRNA:   3'- aGGUaCGagCGCGU-CCGgGuCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 6693 0.66 0.31267
Target:  5'- gCCA---UCGUGCAGGCacaccuuguCCugGGCGCGCa -3'
miRNA:   3'- aGGUacgAGCGCGUCCG---------GG--UCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 7770 0.71 0.13235
Target:  5'- aUCCAgGCUCGCGCcuucGCCCuGCGagGCg -3'
miRNA:   3'- -AGGUaCGAGCGCGuc--CGGGuCGCg-CG- -5'
26696 5' -61.7 NC_005808.1 + 7837 0.67 0.283446
Target:  5'- cCCAUGUUCaGCGCGauGGUgaGGCGgGCu -3'
miRNA:   3'- aGGUACGAG-CGCGU--CCGggUCGCgCG- -5'
26696 5' -61.7 NC_005808.1 + 7950 0.72 0.112181
Target:  5'- uUCCGacaGCUUGCcCGuGGCCuCGGCGCGCa -3'
miRNA:   3'- -AGGUa--CGAGCGcGU-CCGG-GUCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.