miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26696 5' -61.7 NC_005808.1 + 42410 0.67 0.276487
Target:  5'- gCCcgGCagCGUGaCGGuGCCCAGCgacaccgggGCGCa -3'
miRNA:   3'- aGGuaCGa-GCGC-GUC-CGGGUCG---------CGCG- -5'
26696 5' -61.7 NC_005808.1 + 41501 0.66 0.293422
Target:  5'- -aCAUGC-CGCGCGacacGGCCaaggcaaucuaccGCGCGCg -3'
miRNA:   3'- agGUACGaGCGCGU----CCGGgu-----------CGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 39360 0.67 0.249376
Target:  5'- gCC-UGCUCGgGCAGGUCgaauuauucaucgUGGCGgGCa -3'
miRNA:   3'- aGGuACGAGCgCGUCCGG-------------GUCGCgCG- -5'
26696 5' -61.7 NC_005808.1 + 38189 0.66 0.29778
Target:  5'- aCCuacgacUGC-CGCacGCucaAGGCCCGGCGCGa -3'
miRNA:   3'- aGGu-----ACGaGCG--CG---UCCGGGUCGCGCg -5'
26696 5' -61.7 NC_005808.1 + 37912 0.67 0.269664
Target:  5'- gCCAUuCUCGC-C-GGCuauCCGGCGCGCu -3'
miRNA:   3'- aGGUAcGAGCGcGuCCG---GGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 36844 0.66 0.305155
Target:  5'- gCC---CUgGCGCAcucgcuGCCCGGCGCGCu -3'
miRNA:   3'- aGGuacGAgCGCGUc-----CGGGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 36323 0.76 0.060376
Target:  5'- aCC-UGUUCG-GCcuGCCCAGCGCGCa -3'
miRNA:   3'- aGGuACGAGCgCGucCGGGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 36001 0.66 0.290544
Target:  5'- gCCAUGCUCuacgugGUGCcGGCCguGCuGgGCu -3'
miRNA:   3'- aGGUACGAG------CGCGuCCGGguCG-CgCG- -5'
26696 5' -61.7 NC_005808.1 + 35950 0.7 0.155816
Target:  5'- aCCAUGa--GCGCGgacacuccGGCCaAGCGCGCg -3'
miRNA:   3'- aGGUACgagCGCGU--------CCGGgUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 35880 0.66 0.327332
Target:  5'- gCCGUGCUCaaGCAGaugcgcGCCCaggacaaGGUGUGCc -3'
miRNA:   3'- aGGUACGAGcgCGUC------CGGG-------UCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 35860 0.73 0.106122
Target:  5'- uUCC--GCUauugaGCGCGgcGGCCCAGCGCaGCg -3'
miRNA:   3'- -AGGuaCGAg----CGCGU--CCGGGUCGCG-CG- -5'
26696 5' -61.7 NC_005808.1 + 35416 0.71 0.139786
Target:  5'- gUCCcgGCU-GCGUcaGGGCgUCAGCGCGUc -3'
miRNA:   3'- -AGGuaCGAgCGCG--UCCG-GGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 34434 0.67 0.276487
Target:  5'- aUCCggGCgcaCGCGCAGGgaCgCAGCGC-Cg -3'
miRNA:   3'- -AGGuaCGa--GCGCGUCCg-G-GUCGCGcG- -5'
26696 5' -61.7 NC_005808.1 + 32586 0.69 0.187901
Target:  5'- aCCAgg---GCGgGGGCCgGGCGCGCg -3'
miRNA:   3'- aGGUacgagCGCgUCCGGgUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 32000 0.72 0.115331
Target:  5'- uUCUAUGCg-GUGCAGGCU--GCGCGCc -3'
miRNA:   3'- -AGGUACGagCGCGUCCGGguCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 31033 0.74 0.080187
Target:  5'- gCCGagGCaaUCGCGCGGGCCaacGUGCGCg -3'
miRNA:   3'- aGGUa-CG--AGCGCGUCCGGgu-CGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 29560 0.72 0.112181
Target:  5'- gCCGUGCucgggguaUCGCGuCAGgucggccgcGCCCAgGCGCGCg -3'
miRNA:   3'- aGGUACG--------AGCGC-GUC---------CGGGU-CGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 29401 0.69 0.184937
Target:  5'- -aCAUGCagGCGUacaacgccggccaagGGcGCCCAGCGCGg -3'
miRNA:   3'- agGUACGagCGCG---------------UC-CGGGUCGCGCg -5'
26696 5' -61.7 NC_005808.1 + 28754 0.67 0.276487
Target:  5'- gUCCA-GCgcggUGCGCuu-CUCGGCGCGCa -3'
miRNA:   3'- -AGGUaCGa---GCGCGuccGGGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 28566 0.66 0.320324
Target:  5'- gCCAUcGCggCGCGCAcgucGGCcaCCGGCaGCGUg -3'
miRNA:   3'- aGGUA-CGa-GCGCGU----CCG--GGUCG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.