miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26696 5' -61.7 NC_005808.1 + 21205 1.1 0.000125
Target:  5'- uUCCAUGCUCGCGCAGGCCCAGCGCGCc -3'
miRNA:   3'- -AGGUACGAGCGCGUCCGGGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 25125 0.79 0.032068
Target:  5'- gCCGcUGUUCGUGCAGGCCCuGGCGUGg -3'
miRNA:   3'- aGGU-ACGAGCGCGUCCGGG-UCGCGCg -5'
26696 5' -61.7 NC_005808.1 + 24136 0.78 0.039259
Target:  5'- gUCCAgccgGCUgCGCGCcuGGCCCAGCGCc- -3'
miRNA:   3'- -AGGUa---CGA-GCGCGu-CCGGGUCGCGcg -5'
26696 5' -61.7 NC_005808.1 + 4032 0.78 0.044054
Target:  5'- gUCAUGC-CGCGCGGGUCgAGCGCaGCc -3'
miRNA:   3'- aGGUACGaGCGCGUCCGGgUCGCG-CG- -5'
26696 5' -61.7 NC_005808.1 + 36323 0.76 0.060376
Target:  5'- aCC-UGUUCG-GCcuGCCCAGCGCGCa -3'
miRNA:   3'- aGGuACGAGCgCGucCGGGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 25924 0.75 0.067466
Target:  5'- -gCA-GCUUGCGguGGCCCAGCaugucccGCGCu -3'
miRNA:   3'- agGUaCGAGCGCguCCGGGUCG-------CGCG- -5'
26696 5' -61.7 NC_005808.1 + 16054 0.75 0.067658
Target:  5'- gCCA-GUUCGCGCAcguGGCCgCcGCGCGCg -3'
miRNA:   3'- aGGUaCGAGCGCGU---CCGG-GuCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 31033 0.74 0.080187
Target:  5'- gCCGagGCaaUCGCGCGGGCCaacGUGCGCg -3'
miRNA:   3'- aGGUa-CG--AGCGCGUCCGGgu-CGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 18413 0.74 0.089742
Target:  5'- -aCGUGCUCGCGCucauggacacGCCgaAGCGCGCa -3'
miRNA:   3'- agGUACGAGCGCGuc--------CGGg-UCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 2556 0.74 0.089742
Target:  5'- aCCuugGCaUGUGCGacacGGCCCAGCGCGUg -3'
miRNA:   3'- aGGua-CGaGCGCGU----CCGGGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 4388 0.73 0.100372
Target:  5'- gCCAggcGCcgUCGCGcCGGGCCUugAGCGUGCg -3'
miRNA:   3'- aGGUa--CG--AGCGC-GUCCGGG--UCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 15138 0.73 0.103209
Target:  5'- cCCAUGCUgGCgGCGGaugcGCCCAGgGCGa -3'
miRNA:   3'- aGGUACGAgCG-CGUC----CGGGUCgCGCg -5'
26696 5' -61.7 NC_005808.1 + 2013 0.73 0.10524
Target:  5'- cCCAgGCgcucgcuggcgaagUCGCGCAGGCgauagaacaCGGCGCGCa -3'
miRNA:   3'- aGGUaCG--------------AGCGCGUCCGg--------GUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 2727 0.73 0.106122
Target:  5'- gCCGgacGCUUgaGCGC-GGCCCGGCGCuGCu -3'
miRNA:   3'- aGGUa--CGAG--CGCGuCCGGGUCGCG-CG- -5'
26696 5' -61.7 NC_005808.1 + 35860 0.73 0.106122
Target:  5'- uUCC--GCUauugaGCGCGgcGGCCCAGCGCaGCg -3'
miRNA:   3'- -AGGuaCGAg----CGCGU--CCGGGUCGCG-CG- -5'
26696 5' -61.7 NC_005808.1 + 7950 0.72 0.112181
Target:  5'- uUCCGacaGCUUGCcCGuGGCCuCGGCGCGCa -3'
miRNA:   3'- -AGGUa--CGAGCGcGU-CCGG-GUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 29560 0.72 0.112181
Target:  5'- gCCGUGCucgggguaUCGCGuCAGgucggccgcGCCCAgGCGCGCg -3'
miRNA:   3'- aGGUACG--------AGCGC-GUC---------CGGGU-CGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 27438 0.72 0.113431
Target:  5'- gCCcgGCggcCGCAGGCCCuggcgcugguaugccAGCGCGCc -3'
miRNA:   3'- aGGuaCGagcGCGUCCGGG---------------UCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 32000 0.72 0.115331
Target:  5'- uUCUAUGCg-GUGCAGGCU--GCGCGCc -3'
miRNA:   3'- -AGGUACGagCGCGUCCGGguCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 1103 0.72 0.117584
Target:  5'- gCCGUGUcgcgcggcaugUCGCGCAucGGCCCGGUguaaccguuagcucGCGCu -3'
miRNA:   3'- aGGUACG-----------AGCGCGU--CCGGGUCG--------------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.